miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14581 5' -63.1 NC_003521.1 + 206 0.66 0.742517
Target:  5'- cGGcCCGCCGcacgccgCCGCGGaaacCGGUUCCGu -3'
miRNA:   3'- cUCaGGCGGCa------GGCGCUc---GCCGAGGC- -5'
14581 5' -63.1 NC_003521.1 + 3657 0.66 0.751415
Target:  5'- ---gCCGCCGUCUGCcucGGCGGC-CgGg -3'
miRNA:   3'- cucaGGCGGCAGGCGc--UCGCCGaGgC- -5'
14581 5' -63.1 NC_003521.1 + 4361 0.66 0.751415
Target:  5'- cGGUUCGCCGcuugCgGcCGAGCaGGUUCCa -3'
miRNA:   3'- cUCAGGCGGCa---GgC-GCUCG-CCGAGGc -5'
14581 5' -63.1 NC_003521.1 + 5910 0.66 0.715359
Target:  5'- ---aCUGCUGUaCCGCGAGgGGCUaCGa -3'
miRNA:   3'- cucaGGCGGCA-GGCGCUCgCCGAgGC- -5'
14581 5' -63.1 NC_003521.1 + 23987 0.66 0.733536
Target:  5'- -cGUCCGCCGcgggCUGCGAccuccuGCGcGCcaUCCGg -3'
miRNA:   3'- cuCAGGCGGCa---GGCGCU------CGC-CG--AGGC- -5'
14581 5' -63.1 NC_003521.1 + 28708 0.69 0.547379
Target:  5'- aGAGUCCGaCCGUgCGCcagauGGUGGCgcacgCCGa -3'
miRNA:   3'- -CUCAGGC-GGCAgGCGc----UCGCCGa----GGC- -5'
14581 5' -63.1 NC_003521.1 + 30852 0.66 0.751415
Target:  5'- -cGUCUggGCCGUCCGCG-GCaacuuCUCCGa -3'
miRNA:   3'- cuCAGG--CGGCAGGCGCuCGcc---GAGGC- -5'
14581 5' -63.1 NC_003521.1 + 35639 0.66 0.733536
Target:  5'- aGGUcCCGCaCGcgCUGCGAGCGGCa--- -3'
miRNA:   3'- cUCA-GGCG-GCa-GGCGCUCGCCGaggc -5'
14581 5' -63.1 NC_003521.1 + 40528 0.66 0.742517
Target:  5'- cGGcCCGCCGcacgccgCCGCGGaaacCGGUUCCGu -3'
miRNA:   3'- cUCaGGCGGCa------GGCGCUc---GCCGAGGC- -5'
14581 5' -63.1 NC_003521.1 + 43827 0.67 0.687661
Target:  5'- cGGGUcagccgCCGCCGgCCGCGGGCccgucacaGGCgccCCGg -3'
miRNA:   3'- -CUCA------GGCGGCaGGCGCUCG--------CCGa--GGC- -5'
14581 5' -63.1 NC_003521.1 + 44243 0.66 0.715359
Target:  5'- ---gCCGCCGUgCGCGGGagucCGGCgucacgCCGg -3'
miRNA:   3'- cucaGGCGGCAgGCGCUC----GCCGa-----GGC- -5'
14581 5' -63.1 NC_003521.1 + 47626 0.67 0.659611
Target:  5'- -cGUCCaGgCGgCCGUGAcgGCGGCUCUGg -3'
miRNA:   3'- cuCAGG-CgGCaGGCGCU--CGCCGAGGC- -5'
14581 5' -63.1 NC_003521.1 + 53212 0.67 0.696942
Target:  5'- uGAGcUCGCCGgggagUCCGCGGGCGaaGCgaccgCCGg -3'
miRNA:   3'- -CUCaGGCGGC-----AGGCGCUCGC--CGa----GGC- -5'
14581 5' -63.1 NC_003521.1 + 55209 0.67 0.653035
Target:  5'- cAGUCCGCCGcgcuccgUCgGCguuuaauacagccccGAGCGGCUcgCCGg -3'
miRNA:   3'- cUCAGGCGGC-------AGgCG---------------CUCGCCGA--GGC- -5'
14581 5' -63.1 NC_003521.1 + 56779 0.67 0.696942
Target:  5'- -cGUCCagcuGCUGUgCGCGAG-GGCUCgCGa -3'
miRNA:   3'- cuCAGG----CGGCAgGCGCUCgCCGAG-GC- -5'
14581 5' -63.1 NC_003521.1 + 59561 0.67 0.696942
Target:  5'- -cGUCCGgCG-CCGCGGG-GGUUUCGu -3'
miRNA:   3'- cuCAGGCgGCaGGCGCUCgCCGAGGC- -5'
14581 5' -63.1 NC_003521.1 + 68408 0.68 0.612572
Target:  5'- --cUCCGCCucggGUcCCGCGGcGaCGGCUCCGc -3'
miRNA:   3'- cucAGGCGG----CA-GGCGCU-C-GCCGAGGC- -5'
14581 5' -63.1 NC_003521.1 + 70936 0.67 0.668989
Target:  5'- aGGGUCCacaGCagCGagCG-GAGCGGCUCCGg -3'
miRNA:   3'- -CUCAGG---CG--GCagGCgCUCGCCGAGGC- -5'
14581 5' -63.1 NC_003521.1 + 71395 0.72 0.401334
Target:  5'- ---gCCGUCGUCCGCGugagcgaggcGGCGGCcCCGa -3'
miRNA:   3'- cucaGGCGGCAGGCGC----------UCGCCGaGGC- -5'
14581 5' -63.1 NC_003521.1 + 71977 0.66 0.706177
Target:  5'- uGAGcCCGgCGUCCGUGAcGCGcaGCUCg- -3'
miRNA:   3'- -CUCaGGCgGCAGGCGCU-CGC--CGAGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.