miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14582 3' -55.6 NC_003521.1 + 34356 0.66 0.971139
Target:  5'- gCCGUGaGGCCCaggucCUGGgcGUugcgcACCAGCa -3'
miRNA:   3'- -GGCGUaCCGGGc----GACCuuCA-----UGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 213447 0.66 0.971139
Target:  5'- cCCGUGgccUGGCCCcccgGCUGGAgccuGGUGCUc-- -3'
miRNA:   3'- -GGCGU---ACCGGG----CGACCU----UCAUGGuug -5'
14582 3' -55.6 NC_003521.1 + 183683 0.66 0.971139
Target:  5'- gCGCGUGGCCgacgagaccuauCGCuucgUGGAGcugGCCGGCu -3'
miRNA:   3'- gGCGUACCGG------------GCG----ACCUUca-UGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 88075 0.66 0.971139
Target:  5'- uCCGCGcgcuGCCCG-UGGAGGacaACCGGCu -3'
miRNA:   3'- -GGCGUac--CGGGCgACCUUCa--UGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 148949 0.66 0.971139
Target:  5'- gCGCGUGuG-CUGCUGGAGGgcagcGCCAu- -3'
miRNA:   3'- gGCGUAC-CgGGCGACCUUCa----UGGUug -5'
14582 3' -55.6 NC_003521.1 + 99823 0.66 0.971139
Target:  5'- aCGUgcugGGCCUuguuGCUGGAGaggGCCAGCu -3'
miRNA:   3'- gGCGua--CCGGG----CGACCUUca-UGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 131848 0.66 0.971139
Target:  5'- aCgGCAcGGUCC--UGGAGGUgACCGACg -3'
miRNA:   3'- -GgCGUaCCGGGcgACCUUCA-UGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 67572 0.66 0.971139
Target:  5'- -gGCGgcgGGcCCCGCgGGccaGAGUcGCCAACa -3'
miRNA:   3'- ggCGUa--CC-GGGCGaCC---UUCA-UGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 141947 0.66 0.970861
Target:  5'- gCGCGUGGgcgcccaCCUGCUGGgcG-ACgAGCg -3'
miRNA:   3'- gGCGUACC-------GGGCGACCuuCaUGgUUG- -5'
14582 3' -55.6 NC_003521.1 + 113679 0.66 0.968267
Target:  5'- -aGCAguacGGCgaucugcgCCGcCUGGAGGUGCaCGACg -3'
miRNA:   3'- ggCGUa---CCG--------GGC-GACCUUCAUG-GUUG- -5'
14582 3' -55.6 NC_003521.1 + 93181 0.66 0.968267
Target:  5'- aCCGg--GGCUCGaCggucGGAGGUGCCAGa -3'
miRNA:   3'- -GGCguaCCGGGC-Ga---CCUUCAUGGUUg -5'
14582 3' -55.6 NC_003521.1 + 48552 0.66 0.968267
Target:  5'- aCgGCGUGGagacgCCGCUGGugaAGGUgacgGCUAACg -3'
miRNA:   3'- -GgCGUACCg----GGCGACC---UUCA----UGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 204885 0.66 0.968267
Target:  5'- uUCGCGauUGGCCgCGCggcgGGAcGGUggccGCCGAUg -3'
miRNA:   3'- -GGCGU--ACCGG-GCGa---CCU-UCA----UGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 166646 0.66 0.968267
Target:  5'- gCGCcgGGCgCCGC-GGcgcAGcgGCCAGCg -3'
miRNA:   3'- gGCGuaCCG-GGCGaCCu--UCa-UGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 145854 0.66 0.968267
Target:  5'- aCGCGUcucugGGCCCgGCggcgGGcGGcGCCGACg -3'
miRNA:   3'- gGCGUA-----CCGGG-CGa---CCuUCaUGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 103845 0.66 0.967969
Target:  5'- gCCGCGUcucGGCCUcguccagGCUGGcgaucAGcGCCGACa -3'
miRNA:   3'- -GGCGUA---CCGGG-------CGACCu----UCaUGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 72993 0.66 0.965198
Target:  5'- cCCGCGgcggucGuGCCCGg-GGggGU-CCAGCu -3'
miRNA:   3'- -GGCGUa-----C-CGGGCgaCCuuCAuGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 43479 0.66 0.965198
Target:  5'- gCGCGgcGGCCgUGCUGGccgcGGcgGCCAACa -3'
miRNA:   3'- gGCGUa-CCGG-GCGACCu---UCa-UGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 154657 0.66 0.965198
Target:  5'- gCCGCuggccgaGGCCggcagcgagaCGCUGGAGGcUACCGc- -3'
miRNA:   3'- -GGCGua-----CCGG----------GCGACCUUC-AUGGUug -5'
14582 3' -55.6 NC_003521.1 + 147841 0.66 0.965198
Target:  5'- uCCGgAUGGUacgaucggggUUGCUGGggGgcCCGAUg -3'
miRNA:   3'- -GGCgUACCG----------GGCGACCuuCauGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.