miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14582 3' -55.6 NC_003521.1 + 205764 1.1 0.004017
Target:  5'- cCCGCAUGGCCCGCUGGAAGUACCAACc -3'
miRNA:   3'- -GGCGUACCGGGCGACCUUCAUGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 207568 0.8 0.318501
Target:  5'- aUCGCGccGGCCUGCUGGcguGUGCCAGCu -3'
miRNA:   3'- -GGCGUa-CCGGGCGACCuu-CAUGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 137509 0.78 0.41197
Target:  5'- gCGCGUcaGcGCCUGCUGGA-GUACCGGCg -3'
miRNA:   3'- gGCGUA--C-CGGGCGACCUuCAUGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 132323 0.77 0.455615
Target:  5'- cCCGCGUGcGCCUGCgggugcuagUGGAAGUGCUgAGCa -3'
miRNA:   3'- -GGCGUAC-CGGGCG---------ACCUUCAUGG-UUG- -5'
14582 3' -55.6 NC_003521.1 + 197363 0.77 0.482967
Target:  5'- gCCGCGcUGGCCCGCUGuGAgAGUuCCAGg -3'
miRNA:   3'- -GGCGU-ACCGGGCGAC-CU-UCAuGGUUg -5'
14582 3' -55.6 NC_003521.1 + 89175 0.76 0.49226
Target:  5'- gCCGUGggccUGGCCCuGCUGGAcGUGCuCAACg -3'
miRNA:   3'- -GGCGU----ACCGGG-CGACCUuCAUG-GUUG- -5'
14582 3' -55.6 NC_003521.1 + 119746 0.75 0.549579
Target:  5'- uCCGCGUaugcGGCa-GCUGG-AGUACCAGCa -3'
miRNA:   3'- -GGCGUA----CCGggCGACCuUCAUGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 166297 0.75 0.549579
Target:  5'- uCCGCGUGGCCuCGUUGcGuacgGCCAGCa -3'
miRNA:   3'- -GGCGUACCGG-GCGAC-CuucaUGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 110529 0.75 0.569167
Target:  5'- -gGCA-GGUCUGCUGGAAGgcggGCCGAUg -3'
miRNA:   3'- ggCGUaCCGGGCGACCUUCa---UGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 39659 0.74 0.608797
Target:  5'- gCGCAUGGCUCgGCUGGuGGUGuuAGCc -3'
miRNA:   3'- gGCGUACCGGG-CGACCuUCAUggUUG- -5'
14582 3' -55.6 NC_003521.1 + 239886 0.74 0.608798
Target:  5'- gCGCAUGGCUCgGCUGGuGGUGuuAGCc -3'
miRNA:   3'- gGCGUACCGGG-CGACCuUCAUggUUG- -5'
14582 3' -55.6 NC_003521.1 + 137346 0.74 0.638716
Target:  5'- aCGCG-GGCCCGCUGGAGccGCCc-- -3'
miRNA:   3'- gGCGUaCCGGGCGACCUUcaUGGuug -5'
14582 3' -55.6 NC_003521.1 + 229229 0.73 0.65865
Target:  5'- cCCGCcaGUGGaCCCGCgggccgcGGAGGUGCUuGCg -3'
miRNA:   3'- -GGCG--UACC-GGGCGa------CCUUCAUGGuUG- -5'
14582 3' -55.6 NC_003521.1 + 197144 0.73 0.678502
Target:  5'- -gGaCGUGGCCCuGCUGGAAGUuCCGc- -3'
miRNA:   3'- ggC-GUACCGGG-CGACCUUCAuGGUug -5'
14582 3' -55.6 NC_003521.1 + 74750 0.73 0.678502
Target:  5'- cCCGCuAUGGCCCuGC-GGGAGUggaugcugGCUAACa -3'
miRNA:   3'- -GGCG-UACCGGG-CGaCCUUCA--------UGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 13197 0.73 0.688378
Target:  5'- gCCGCucgGGCCgccgUGUUGGAGGgccgACCGGCg -3'
miRNA:   3'- -GGCGua-CCGG----GCGACCUUCa---UGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 62834 0.73 0.697228
Target:  5'- -gGCAUGGCCCGCUcucugacccggcaGGuGGUACaCGAUa -3'
miRNA:   3'- ggCGUACCGGGCGA-------------CCuUCAUG-GUUG- -5'
14582 3' -55.6 NC_003521.1 + 72028 0.73 0.69821
Target:  5'- gCCGCGUGGCCUGCaccaGGuccuGGUGCaGACc -3'
miRNA:   3'- -GGCGUACCGGGCGa---CCu---UCAUGgUUG- -5'
14582 3' -55.6 NC_003521.1 + 166080 0.72 0.717706
Target:  5'- cCCGCAgGGCCauaGC-GGGAGcggGCCGGCa -3'
miRNA:   3'- -GGCGUaCCGGg--CGaCCUUCa--UGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 170821 0.72 0.717706
Target:  5'- aCCGC-UGcGCUCGCUGGGAcUGCaCGACg -3'
miRNA:   3'- -GGCGuAC-CGGGCGACCUUcAUG-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.