miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14582 3' -55.6 NC_003521.1 + 4535 0.7 0.850408
Target:  5'- aCCGCAUcGCCCcgaggcguuGCUcugaGGAucgAGUGCCGACg -3'
miRNA:   3'- -GGCGUAcCGGG---------CGA----CCU---UCAUGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 6642 0.67 0.927973
Target:  5'- aCGCuUGGCCCGCUuGcGAcGUuGCCAGa -3'
miRNA:   3'- gGCGuACCGGGCGA-C-CUuCA-UGGUUg -5'
14582 3' -55.6 NC_003521.1 + 7970 0.71 0.774252
Target:  5'- gUCGCGgccgggagGGUCCGCggcggcgggGGAGGUACCGGg -3'
miRNA:   3'- -GGCGUa-------CCGGGCGa--------CCUUCAUGGUUg -5'
14582 3' -55.6 NC_003521.1 + 12034 0.67 0.950444
Target:  5'- uUCGCAcgucacGGCCUGUugcaccUGGAGGUcaucuacGCCGACa -3'
miRNA:   3'- -GGCGUa-----CCGGGCG------ACCUUCA-------UGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 13197 0.73 0.688378
Target:  5'- gCCGCucgGGCCgccgUGUUGGAGGgccgACCGGCg -3'
miRNA:   3'- -GGCGua-CCGG----GCGACCUUCa---UGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 13881 0.66 0.961926
Target:  5'- gCCGcCAUGGauuUCGCcGGggGgcCCGGCg -3'
miRNA:   3'- -GGC-GUACCg--GGCGaCCuuCauGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 13920 0.7 0.826465
Target:  5'- gCCGCGgaGGCCgCGCUGGccgccguGGUGCCcccGCa -3'
miRNA:   3'- -GGCGUa-CCGG-GCGACCu------UCAUGGu--UG- -5'
14582 3' -55.6 NC_003521.1 + 16273 0.67 0.927458
Target:  5'- gCCGC-UGGuuCCUGCUGGGcgccgugGGUGCCuACc -3'
miRNA:   3'- -GGCGuACC--GGGCGACCU-------UCAUGGuUG- -5'
14582 3' -55.6 NC_003521.1 + 16415 0.7 0.850408
Target:  5'- gCGCcUGGCCgGCgaGGu-GUACCGGCu -3'
miRNA:   3'- gGCGuACCGGgCGa-CCuuCAUGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 16814 0.71 0.804486
Target:  5'- aCCGCcgGGCCCGCcgcugccgcaGGAggaggacaaucacguGGUGCCuGACa -3'
miRNA:   3'- -GGCGuaCCGGGCGa---------CCU---------------UCAUGG-UUG- -5'
14582 3' -55.6 NC_003521.1 + 21534 0.67 0.936856
Target:  5'- aCGCuggccuucaugGGCCCGCUcau-GUGCCAGCc -3'
miRNA:   3'- gGCGua---------CCGGGCGAccuuCAUGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 23627 0.68 0.899448
Target:  5'- aCCGcCGUGGCCUGCcUGGgcGgcauggACCGu- -3'
miRNA:   3'- -GGC-GUACCGGGCG-ACCuuCa-----UGGUug -5'
14582 3' -55.6 NC_003521.1 + 24401 0.67 0.937798
Target:  5'- gCGCcgGGCCCGC-GGAgcauAGaaaGCCAGa -3'
miRNA:   3'- gGCGuaCCGGGCGaCCU----UCa--UGGUUg -5'
14582 3' -55.6 NC_003521.1 + 26318 0.67 0.950847
Target:  5'- uCCGCGcuuccagGGCCgGCUcuccagGGGAGgcuuCCAGCg -3'
miRNA:   3'- -GGCGUa------CCGGgCGA------CCUUCau--GGUUG- -5'
14582 3' -55.6 NC_003521.1 + 27381 0.66 0.961926
Target:  5'- aCGCcuucaaGGCCCgucGCUGGGAG-ACCAu- -3'
miRNA:   3'- gGCGua----CCGGG---CGACCUUCaUGGUug -5'
14582 3' -55.6 NC_003521.1 + 32073 0.66 0.961926
Target:  5'- aCGUAcUGGCCCG-UGGccacgGCCAGCg -3'
miRNA:   3'- gGCGU-ACCGGGCgACCuuca-UGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 34356 0.66 0.971139
Target:  5'- gCCGUGaGGCCCaggucCUGGgcGUugcgcACCAGCa -3'
miRNA:   3'- -GGCGUaCCGGGc----GACCuuCA-----UGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 34424 0.66 0.954754
Target:  5'- cCCGUGUGaaaucCCCGuCUGGAAaGUcCCGACa -3'
miRNA:   3'- -GGCGUACc----GGGC-GACCUU-CAuGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 39659 0.74 0.608797
Target:  5'- gCGCAUGGCUCgGCUGGuGGUGuuAGCc -3'
miRNA:   3'- gGCGUACCGGG-CGACCuUCAUggUUG- -5'
14582 3' -55.6 NC_003521.1 + 41812 0.69 0.879676
Target:  5'- aCCGggaaGUGGUCU-CUGG-AGUGCCAACa -3'
miRNA:   3'- -GGCg---UACCGGGcGACCuUCAUGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.