miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14582 3' -55.6 NC_003521.1 + 91178 0.69 0.865441
Target:  5'- gCGCAUGcGCCU-CUGGAagcGGUACCGcggGCg -3'
miRNA:   3'- gGCGUAC-CGGGcGACCU---UCAUGGU---UG- -5'
14582 3' -55.6 NC_003521.1 + 228899 0.71 0.809652
Target:  5'- aCCaGCcgGGCCCgGCUGGggG-ACuCGAUc -3'
miRNA:   3'- -GG-CGuaCCGGG-CGACCuuCaUG-GUUG- -5'
14582 3' -55.6 NC_003521.1 + 54525 0.7 0.834624
Target:  5'- uCUGCAcGGCgCCGCUGGGGc--CCGGCg -3'
miRNA:   3'- -GGCGUaCCG-GGCGACCUUcauGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 190080 0.7 0.834624
Target:  5'- aCGUucUGGCCCGCUGcu-GcGCCGACg -3'
miRNA:   3'- gGCGu-ACCGGGCGACcuuCaUGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 128078 0.7 0.850408
Target:  5'- gCCGCccaugGGCUcgCGCUGGAAGcgcgacuCCAGCa -3'
miRNA:   3'- -GGCGua---CCGG--GCGACCUUCau-----GGUUG- -5'
14582 3' -55.6 NC_003521.1 + 69229 0.69 0.858022
Target:  5'- gCCGCucgGGuUCCGCUGGugcuGGUgaugauggugGCCGACg -3'
miRNA:   3'- -GGCGua-CC-GGGCGACCu---UCA----------UGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 92460 0.69 0.858022
Target:  5'- cCCGCucggcuuGCCCGCUcGGggGUcucCCAGCc -3'
miRNA:   3'- -GGCGuac----CGGGCGA-CCuuCAu--GGUUG- -5'
14582 3' -55.6 NC_003521.1 + 140476 0.69 0.858022
Target:  5'- uCCGCGUGGCuucgCCGCgguugaGGAAGgcGCCcGCg -3'
miRNA:   3'- -GGCGUACCG----GGCGa-----CCUUCa-UGGuUG- -5'
14582 3' -55.6 NC_003521.1 + 137441 0.69 0.864708
Target:  5'- gCGCAgGaGCCCG-UGGAGGUaucgcgcACCGACg -3'
miRNA:   3'- gGCGUaC-CGGGCgACCUUCA-------UGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 216822 0.71 0.809652
Target:  5'- gCCGgAUGGCgCGCaGGAGGUcgcaGCCcGCg -3'
miRNA:   3'- -GGCgUACCGgGCGaCCUUCA----UGGuUG- -5'
14582 3' -55.6 NC_003521.1 + 70712 0.71 0.801012
Target:  5'- gCGUcgGcGCCUGCgccGGAuGUACCGGCa -3'
miRNA:   3'- gGCGuaC-CGGGCGa--CCUuCAUGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 71288 0.72 0.727354
Target:  5'- gCCGCGgcacgGGCCC-CUGG-GGcACCAGCa -3'
miRNA:   3'- -GGCGUa----CCGGGcGACCuUCaUGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 132323 0.77 0.455615
Target:  5'- cCCGCGUGcGCCUGCgggugcuagUGGAAGUGCUgAGCa -3'
miRNA:   3'- -GGCGUAC-CGGGCG---------ACCUUCAUGG-UUG- -5'
14582 3' -55.6 NC_003521.1 + 166297 0.75 0.549579
Target:  5'- uCCGCGUGGCCuCGUUGcGuacgGCCAGCa -3'
miRNA:   3'- -GGCGUACCGG-GCGAC-CuucaUGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 110529 0.75 0.569167
Target:  5'- -gGCA-GGUCUGCUGGAAGgcggGCCGAUg -3'
miRNA:   3'- ggCGUaCCGGGCGACCUUCa---UGGUUG- -5'
14582 3' -55.6 NC_003521.1 + 239886 0.74 0.608798
Target:  5'- gCGCAUGGCUCgGCUGGuGGUGuuAGCc -3'
miRNA:   3'- gGCGUACCGGG-CGACCuUCAUggUUG- -5'
14582 3' -55.6 NC_003521.1 + 137346 0.74 0.638716
Target:  5'- aCGCG-GGCCCGCUGGAGccGCCc-- -3'
miRNA:   3'- gGCGUaCCGGGCGACCUUcaUGGuug -5'
14582 3' -55.6 NC_003521.1 + 197144 0.73 0.678502
Target:  5'- -gGaCGUGGCCCuGCUGGAAGUuCCGc- -3'
miRNA:   3'- ggC-GUACCGGG-CGACCUUCAuGGUug -5'
14582 3' -55.6 NC_003521.1 + 72028 0.73 0.69821
Target:  5'- gCCGCGUGGCCUGCaccaGGuccuGGUGCaGACc -3'
miRNA:   3'- -GGCGUACCGGGCGa---CCu---UCAUGgUUG- -5'
14582 3' -55.6 NC_003521.1 + 166080 0.72 0.717706
Target:  5'- cCCGCAgGGCCauaGC-GGGAGcggGCCGGCa -3'
miRNA:   3'- -GGCGUaCCGGg--CGaCCUUCa--UGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.