miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14582 5' -54.5 NC_003521.1 + 225998 0.66 0.975593
Target:  5'- uGGUUGggGUcGUCCAUCUGGAUg-- -3'
miRNA:   3'- gUCGACgaCAuCAGGUAGACCUGgac -5'
14582 5' -54.5 NC_003521.1 + 118354 0.66 0.967198
Target:  5'- -uGCUGUUGUAGUaUCAUCUGGGg--- -3'
miRNA:   3'- guCGACGACAUCA-GGUAGACCUggac -5'
14582 5' -54.5 NC_003521.1 + 207603 0.66 0.967198
Target:  5'- cCGGCUGCa--AGaUCCGUCUGGGCg-- -3'
miRNA:   3'- -GUCGACGacaUC-AGGUAGACCUGgac -5'
14582 5' -54.5 NC_003521.1 + 47486 0.66 0.963994
Target:  5'- aGGCUGUUGaAGUCC-UCggcccGGACCg- -3'
miRNA:   3'- gUCGACGACaUCAGGuAGa----CCUGGac -5'
14582 5' -54.5 NC_003521.1 + 4795 0.66 0.963994
Target:  5'- uGGCUGCUGcUAGUCUuuugcuucaaaaAUCUGaGACUg- -3'
miRNA:   3'- gUCGACGAC-AUCAGG------------UAGAC-CUGGac -5'
14582 5' -54.5 NC_003521.1 + 98910 0.67 0.953085
Target:  5'- aGGCgGCUGUAGUgCGUCUGcucgcgcacGGCCg- -3'
miRNA:   3'- gUCGaCGACAUCAgGUAGAC---------CUGGac -5'
14582 5' -54.5 NC_003521.1 + 30842 0.67 0.949002
Target:  5'- -cGCUGgUGg---CCGUCUGGGCCg- -3'
miRNA:   3'- guCGACgACaucaGGUAGACCUGGac -5'
14582 5' -54.5 NC_003521.1 + 43986 0.67 0.949002
Target:  5'- gAGCUGCUcggGGUUCG--UGGGCCUGc -3'
miRNA:   3'- gUCGACGAca-UCAGGUagACCUGGAC- -5'
14582 5' -54.5 NC_003521.1 + 197149 0.68 0.925103
Target:  5'- uGGCccUGCUGgaAGuUCCGcgCUGGGCCUGg -3'
miRNA:   3'- gUCG--ACGACa-UC-AGGUa-GACCUGGAC- -5'
14582 5' -54.5 NC_003521.1 + 1329 0.68 0.919617
Target:  5'- uGGCgcgGCUGUaucGGUCCAaccggCUGGGgCUGa -3'
miRNA:   3'- gUCGa--CGACA---UCAGGUa----GACCUgGAC- -5'
14582 5' -54.5 NC_003521.1 + 201557 0.68 0.919617
Target:  5'- uGGCgcgGCUGUaucGGUCCAaccggCUGGGgCUGa -3'
miRNA:   3'- gUCGa--CGACA---UCAGGUa----GACCUgGAC- -5'
14582 5' -54.5 NC_003521.1 + 167421 0.68 0.919617
Target:  5'- uCGGCUGCUGUccuccCCAUCcuccgUGGACCa- -3'
miRNA:   3'- -GUCGACGACAuca--GGUAG-----ACCUGGac -5'
14582 5' -54.5 NC_003521.1 + 14638 0.69 0.907939
Target:  5'- gCAGCaGCUGcAGUgCGUCUGGcCCUu -3'
miRNA:   3'- -GUCGaCGACaUCAgGUAGACCuGGAc -5'
14582 5' -54.5 NC_003521.1 + 208426 0.69 0.907939
Target:  5'- gGGCUGCUGU-GUCgCAcgCccgaGGACCUGg -3'
miRNA:   3'- gUCGACGACAuCAG-GUa-Ga---CCUGGAC- -5'
14582 5' -54.5 NC_003521.1 + 145145 0.69 0.89533
Target:  5'- uCAGCUGCUGgagaaggagucgcgcGGccagucgcgcaacUCCGUCUGGcACCUGc -3'
miRNA:   3'- -GUCGACGACa--------------UC-------------AGGUAGACC-UGGAC- -5'
14582 5' -54.5 NC_003521.1 + 21618 0.69 0.888685
Target:  5'- -uGCUGcCUGgcGaccgCCAUCaUGGGCCUGg -3'
miRNA:   3'- guCGAC-GACauCa---GGUAG-ACCUGGAC- -5'
14582 5' -54.5 NC_003521.1 + 6180 0.7 0.867423
Target:  5'- uGGCUGUUG-GGUCCGUCguccUGGAUCUc -3'
miRNA:   3'- gUCGACGACaUCAGGUAG----ACCUGGAc -5'
14582 5' -54.5 NC_003521.1 + 165114 0.72 0.774764
Target:  5'- aCAGCggcgGCUGUGGUgCGgacgggggCUGGACCg- -3'
miRNA:   3'- -GUCGa---CGACAUCAgGUa-------GACCUGGac -5'
14582 5' -54.5 NC_003521.1 + 177692 0.72 0.755953
Target:  5'- gCAGCUGCUGc--UCCAUCUGGcugACCa- -3'
miRNA:   3'- -GUCGACGACaucAGGUAGACC---UGGac -5'
14582 5' -54.5 NC_003521.1 + 205798 1.09 0.00542
Target:  5'- cCAGCUGCUGUAGUCCAUCUGGACCUGg -3'
miRNA:   3'- -GUCGACGACAUCAGGUAGACCUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.