miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14583 5' -56.9 NC_003521.1 + 88604 0.66 0.943089
Target:  5'- uUGCccACAGCCaCGUGCGCCgugaCCUCGu -3'
miRNA:   3'- uAUGu-UGUCGGgGCAUGUGGa---GGGGC- -5'
14583 5' -56.9 NC_003521.1 + 199239 0.66 0.943089
Target:  5'- -gACAugAGCaCCgUGUAUACCUCgUCGg -3'
miRNA:   3'- uaUGUugUCG-GG-GCAUGUGGAGgGGC- -5'
14583 5' -56.9 NC_003521.1 + 198169 0.66 0.943089
Target:  5'- cGUGCAGCAGa--CGUACGCCUacaCCgCGg -3'
miRNA:   3'- -UAUGUUGUCgggGCAUGUGGAg--GG-GC- -5'
14583 5' -56.9 NC_003521.1 + 83950 0.66 0.943089
Target:  5'- -gGCAGCGGCCgCCGg--AUUUCCUCGa -3'
miRNA:   3'- uaUGUUGUCGG-GGCaugUGGAGGGGC- -5'
14583 5' -56.9 NC_003521.1 + 124705 0.66 0.943089
Target:  5'- gGUGC-ACGGCCgCCuu-UACCUCCUCGu -3'
miRNA:   3'- -UAUGuUGUCGG-GGcauGUGGAGGGGC- -5'
14583 5' -56.9 NC_003521.1 + 34642 0.66 0.943089
Target:  5'- cGUGCucGCGGCCCUGgcCGCCcugCUCCu -3'
miRNA:   3'- -UAUGu-UGUCGGGGCauGUGGa--GGGGc -5'
14583 5' -56.9 NC_003521.1 + 223361 0.66 0.943089
Target:  5'- -gGCGGCGGCCuuGgucagcagcgACAUCgcggcgCCCCGa -3'
miRNA:   3'- uaUGUUGUCGGggCa---------UGUGGa-----GGGGC- -5'
14583 5' -56.9 NC_003521.1 + 59614 0.66 0.943089
Target:  5'- -gGCGGCGGCCCCGgcgGCgACCgcggCUCGc -3'
miRNA:   3'- uaUGUUGUCGGGGCa--UG-UGGag--GGGC- -5'
14583 5' -56.9 NC_003521.1 + 191891 0.66 0.942647
Target:  5'- -gGCGGCGGCgCCaCGUccuucacggACACCggcugacacauggUCCCCGg -3'
miRNA:   3'- uaUGUUGUCG-GG-GCA---------UGUGG-------------AGGGGC- -5'
14583 5' -56.9 NC_003521.1 + 67615 0.66 0.942647
Target:  5'- cUACugauguAC-GCCCUGUGCACCcuaguguUCCCCc -3'
miRNA:   3'- uAUGu-----UGuCGGGGCAUGUGG-------AGGGGc -5'
14583 5' -56.9 NC_003521.1 + 180290 0.66 0.939036
Target:  5'- cGUugAGCAGCaccgucucccagaugCCGUGCAgcuCCUCCCgGg -3'
miRNA:   3'- -UAugUUGUCGg--------------GGCAUGU---GGAGGGgC- -5'
14583 5' -56.9 NC_003521.1 + 209849 0.66 0.938575
Target:  5'- uUGCGGCAGCucuacCUCGUaGCGCCgagUCCCGu -3'
miRNA:   3'- uAUGUUGUCG-----GGGCA-UGUGGa--GGGGC- -5'
14583 5' -56.9 NC_003521.1 + 226914 0.66 0.938575
Target:  5'- -cGCGgccuccGCGGCCCCcuccGCGCCgggccCCCCGg -3'
miRNA:   3'- uaUGU------UGUCGGGGca--UGUGGa----GGGGC- -5'
14583 5' -56.9 NC_003521.1 + 74701 0.66 0.938575
Target:  5'- -gACGGCGGCgCCGcggcaGCGgCUCCCUGc -3'
miRNA:   3'- uaUGUUGUCGgGGCa----UGUgGAGGGGC- -5'
14583 5' -56.9 NC_003521.1 + 153427 0.66 0.938575
Target:  5'- -gGCGugAGCgUCGgcguCACCUCCgCCGc -3'
miRNA:   3'- uaUGUugUCGgGGCau--GUGGAGG-GGC- -5'
14583 5' -56.9 NC_003521.1 + 139965 0.66 0.938575
Target:  5'- cAUGgAGCAGUCCCGgccggaGCCUCUcaCCGa -3'
miRNA:   3'- -UAUgUUGUCGGGGCaug---UGGAGG--GGC- -5'
14583 5' -56.9 NC_003521.1 + 22278 0.66 0.938575
Target:  5'- cUACcACGGCCUCGccugGCAgCUCUCCu -3'
miRNA:   3'- uAUGuUGUCGGGGCa---UGUgGAGGGGc -5'
14583 5' -56.9 NC_003521.1 + 119696 0.66 0.938575
Target:  5'- cAUGCugcGCGGCCCCcaGUACAgCgaacaCCCCa -3'
miRNA:   3'- -UAUGu--UGUCGGGG--CAUGUgGa----GGGGc -5'
14583 5' -56.9 NC_003521.1 + 196498 0.66 0.938575
Target:  5'- gGUGCAGCuuGCCCa--GCACCUgcuucagcaCCCCGu -3'
miRNA:   3'- -UAUGUUGu-CGGGgcaUGUGGA---------GGGGC- -5'
14583 5' -56.9 NC_003521.1 + 206607 0.66 0.938575
Target:  5'- -gGCGACAcggGCgCCGUcuACGCCgCCCUGg -3'
miRNA:   3'- uaUGUUGU---CGgGGCA--UGUGGaGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.