miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14584 3' -57.1 NC_003521.1 + 235619 0.66 0.947309
Target:  5'- gGAGCCCGaccgcgUGGUGUUUcagUugGGAGgGGu -3'
miRNA:   3'- aCUCGGGC------ACCGCAAG---GugCUUCgCU- -5'
14584 3' -57.1 NC_003521.1 + 126003 0.66 0.947309
Target:  5'- cGuGCaCCGUGGCcg-CCGCGuuGCGc -3'
miRNA:   3'- aCuCG-GGCACCGcaaGGUGCuuCGCu -5'
14584 3' -57.1 NC_003521.1 + 27523 0.66 0.947309
Target:  5'- -cGGCCCGaGGCGc-CCACGGuGGCGu -3'
miRNA:   3'- acUCGGGCaCCGCaaGGUGCU-UCGCu -5'
14584 3' -57.1 NC_003521.1 + 169544 0.66 0.947309
Target:  5'- gGGGCCCGUGccGCGgcccccgccUCCGcCGAuguuGGCGGg -3'
miRNA:   3'- aCUCGGGCAC--CGCa--------AGGU-GCU----UCGCU- -5'
14584 3' -57.1 NC_003521.1 + 170950 0.66 0.947309
Target:  5'- -uGGCCUG-GGCGUggcgCUGCGcGGCGGc -3'
miRNA:   3'- acUCGGGCaCCGCAa---GGUGCuUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 82361 0.66 0.94305
Target:  5'- gUGGGCUUgaccgaggugcaGUGGaUGUUCCGguCGAAGCGGa -3'
miRNA:   3'- -ACUCGGG------------CACC-GCAAGGU--GCUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 70354 0.66 0.94305
Target:  5'- uUGAGCuuGUcGGCGggguagagCCGC-AGGCGGc -3'
miRNA:   3'- -ACUCGggCA-CCGCaa------GGUGcUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 24437 0.66 0.94305
Target:  5'- gGAGuCCCGUGGacg-CC-CGAGGCa- -3'
miRNA:   3'- aCUC-GGGCACCgcaaGGuGCUUCGcu -5'
14584 3' -57.1 NC_003521.1 + 216843 0.66 0.94305
Target:  5'- cGcAGCCCGcGGCGgacgacugUUCCAggcccgUGGAGCGGg -3'
miRNA:   3'- aC-UCGGGCaCCGC--------AAGGU------GCUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 86700 0.66 0.94305
Target:  5'- cGGGCCgCGgcGGCGa-CgACGAGGCGGu -3'
miRNA:   3'- aCUCGG-GCa-CCGCaaGgUGCUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 183453 0.66 0.94305
Target:  5'- cGAcGCCC-UGGCGcgUCACGGcGGCGGu -3'
miRNA:   3'- aCU-CGGGcACCGCaaGGUGCU-UCGCU- -5'
14584 3' -57.1 NC_003521.1 + 183374 0.66 0.942613
Target:  5'- gGGGCCgGUuccgcuuuugcGGCGUgcaggagcccgUCCGCGAgacggugGGCGAc -3'
miRNA:   3'- aCUCGGgCA-----------CCGCA-----------AGGUGCU-------UCGCU- -5'
14584 3' -57.1 NC_003521.1 + 215442 0.66 0.939031
Target:  5'- aGAGCCgCGggugcUGGCGccaggccgagggagCCACGAAGgCGAa -3'
miRNA:   3'- aCUCGG-GC-----ACCGCaa------------GGUGCUUC-GCU- -5'
14584 3' -57.1 NC_003521.1 + 64089 0.66 0.938574
Target:  5'- cGAGCCCGg------CCugGAGGCGGg -3'
miRNA:   3'- aCUCGGGCaccgcaaGGugCUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 126304 0.66 0.938574
Target:  5'- gGuGCCCGUGGCGgcggUgggcacggcggCCACGAcggacAGCa- -3'
miRNA:   3'- aCuCGGGCACCGCa---A-----------GGUGCU-----UCGcu -5'
14584 3' -57.1 NC_003521.1 + 180514 0.66 0.938114
Target:  5'- aGAGCCCGUGGggugucgucucauCGUcaccaccgucUCCGCGgcGUa- -3'
miRNA:   3'- aCUCGGGCACC-------------GCA----------AGGUGCuuCGcu -5'
14584 3' -57.1 NC_003521.1 + 238215 0.66 0.933878
Target:  5'- aGAGCCUG-GGCGUcggCACGgcGuCGAg -3'
miRNA:   3'- aCUCGGGCaCCGCAag-GUGCuuC-GCU- -5'
14584 3' -57.1 NC_003521.1 + 128927 0.66 0.933878
Target:  5'- aGGGCCuggcgcgccagCGUGGCGUucUCCACc-AGCGu -3'
miRNA:   3'- aCUCGG-----------GCACCGCA--AGGUGcuUCGCu -5'
14584 3' -57.1 NC_003521.1 + 26454 0.66 0.933878
Target:  5'- -uGGCCUGcaacGGCGUggCCugGGAGCa- -3'
miRNA:   3'- acUCGGGCa---CCGCAa-GGugCUUCGcu -5'
14584 3' -57.1 NC_003521.1 + 37510 0.66 0.933878
Target:  5'- cGGGCCCGcggacaucaGCGacgUCCugGggGUGGg -3'
miRNA:   3'- aCUCGGGCac-------CGCa--AGGugCuuCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.