miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14584 3' -57.1 NC_003521.1 + 206963 1.09 0.00375
Target:  5'- aUGAGCCCGUGGCGUUCCACGAAGCGAa -3'
miRNA:   3'- -ACUCGGGCACCGCAAGGUGCUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 128752 0.76 0.461183
Target:  5'- cGAGCCCGUGGUGUagguggugggguucUCCAgGAugcugucgguGGCGGc -3'
miRNA:   3'- aCUCGGGCACCGCA--------------AGGUgCU----------UCGCU- -5'
14584 3' -57.1 NC_003521.1 + 163459 0.74 0.576596
Target:  5'- cGAGCCCGUGGUGggCUacuacaACGAccccguGGCGGu -3'
miRNA:   3'- aCUCGGGCACCGCaaGG------UGCU------UCGCU- -5'
14584 3' -57.1 NC_003521.1 + 166680 0.73 0.596137
Target:  5'- cUGGGcCCCGUGGCGcgCCACGucGUc- -3'
miRNA:   3'- -ACUC-GGGCACCGCaaGGUGCuuCGcu -5'
14584 3' -57.1 NC_003521.1 + 165217 0.73 0.596137
Target:  5'- cUGAG-CCGUGGCGccgCCcgaacGCGAAGCGGa -3'
miRNA:   3'- -ACUCgGGCACCGCaa-GG-----UGCUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 102853 0.73 0.605948
Target:  5'- gGGcGCCCGUGGCGUaggUCUgggccgugcguaGCGAGGCGc -3'
miRNA:   3'- aCU-CGGGCACCGCA---AGG------------UGCUUCGCu -5'
14584 3' -57.1 NC_003521.1 + 201330 0.72 0.645303
Target:  5'- cGuGCUgGUGGCcaccaucgUCCACGAGGCGGc -3'
miRNA:   3'- aCuCGGgCACCGca------AGGUGCUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 1102 0.72 0.645303
Target:  5'- cGuGCUgGUGGCcaccaucgUCCACGAGGCGGc -3'
miRNA:   3'- aCuCGGgCACCGca------AGGUGCUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 21771 0.72 0.655135
Target:  5'- cUGGGCgCCGUGGCGUgCCugucCGuGGCGGu -3'
miRNA:   3'- -ACUCG-GGCACCGCAaGGu---GCuUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 146622 0.71 0.731589
Target:  5'- cGAGCCCGUcgucgucuucaagGGCcccggCCACGAcgacGGCGAg -3'
miRNA:   3'- aCUCGGGCA-------------CCGcaa--GGUGCU----UCGCU- -5'
14584 3' -57.1 NC_003521.1 + 128129 0.71 0.732534
Target:  5'- gGGGUCCGagGGCGgcCCGCGcucGGCGAa -3'
miRNA:   3'- aCUCGGGCa-CCGCaaGGUGCu--UCGCU- -5'
14584 3' -57.1 NC_003521.1 + 228040 0.71 0.741932
Target:  5'- --uGUCgGUGGCGUUaaGCGGAGCGGu -3'
miRNA:   3'- acuCGGgCACCGCAAggUGCUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 74126 0.7 0.75124
Target:  5'- aUGGGCgCCGUgcaggacgacguGGCGcgCCACGggGCc- -3'
miRNA:   3'- -ACUCG-GGCA------------CCGCaaGGUGCuuCGcu -5'
14584 3' -57.1 NC_003521.1 + 233477 0.7 0.75124
Target:  5'- gUGA-CCUGUGGUGUugagCCGCGAGGCc- -3'
miRNA:   3'- -ACUcGGGCACCGCAa---GGUGCUUCGcu -5'
14584 3' -57.1 NC_003521.1 + 100834 0.7 0.764108
Target:  5'- --cGCCCGaggagaagcgcgaguUGGUGUUCCACG-AGCGc -3'
miRNA:   3'- acuCGGGC---------------ACCGCAAGGUGCuUCGCu -5'
14584 3' -57.1 NC_003521.1 + 77457 0.7 0.778553
Target:  5'- cGGGCCgGcgcuccuucUGGCGgUUCAUGAGGCGGg -3'
miRNA:   3'- aCUCGGgC---------ACCGCaAGGUGCUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 72989 0.7 0.778553
Target:  5'- cGAGCCCGcGGCGgucgugCC-CGggGgGGu -3'
miRNA:   3'- aCUCGGGCaCCGCaa----GGuGCuuCgCU- -5'
14584 3' -57.1 NC_003521.1 + 57322 0.7 0.778553
Target:  5'- aGGGCCCGUGGCGcaugaCCAucugaaagagccUGAAGCu- -3'
miRNA:   3'- aCUCGGGCACCGCaa---GGU------------GCUUCGcu -5'
14584 3' -57.1 NC_003521.1 + 100593 0.7 0.787425
Target:  5'- gGGGCCgGUGGaCGaggCgGCGAAGCGu -3'
miRNA:   3'- aCUCGGgCACC-GCaa-GgUGCUUCGCu -5'
14584 3' -57.1 NC_003521.1 + 167158 0.69 0.804774
Target:  5'- uUGGGCgCCucgGGCG-UCUugGAGGCGGc -3'
miRNA:   3'- -ACUCG-GGca-CCGCaAGGugCUUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.