miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14584 3' -57.1 NC_003521.1 + 1102 0.72 0.645303
Target:  5'- cGuGCUgGUGGCcaccaucgUCCACGAGGCGGc -3'
miRNA:   3'- aCuCGGgCACCGca------AGGUGCUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 12321 0.67 0.907084
Target:  5'- ---aCCCGUcGCGUgcaacUCCACGGAGUGGg -3'
miRNA:   3'- acucGGGCAcCGCA-----AGGUGCUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 17790 0.68 0.881738
Target:  5'- gGAGgCCGUcGGCGUgcuggCCguGCGAccGGCGGa -3'
miRNA:   3'- aCUCgGGCA-CCGCAa----GG--UGCU--UCGCU- -5'
14584 3' -57.1 NC_003521.1 + 20988 0.68 0.877647
Target:  5'- cGGGCCCGcacUGGauccgggucucggaGggCCugGAGGCGGg -3'
miRNA:   3'- aCUCGGGC---ACCg-------------CaaGGugCUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 21771 0.72 0.655135
Target:  5'- cUGGGCgCCGUGGCGUgCCugucCGuGGCGGu -3'
miRNA:   3'- -ACUCG-GGCACCGCAaGGu---GCuUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 24437 0.66 0.94305
Target:  5'- gGAGuCCCGUGGacg-CC-CGAGGCa- -3'
miRNA:   3'- aCUC-GGGCACCgcaaGGuGCUUCGcu -5'
14584 3' -57.1 NC_003521.1 + 26454 0.66 0.933878
Target:  5'- -uGGCCUGcaacGGCGUggCCugGGAGCa- -3'
miRNA:   3'- acUCGGGCa---CCGCAa-GGugCUUCGcu -5'
14584 3' -57.1 NC_003521.1 + 27523 0.66 0.947309
Target:  5'- -cGGCCCGaGGCGc-CCACGGuGGCGu -3'
miRNA:   3'- acUCGGGCaCCGCaaGGUGCU-UCGCu -5'
14584 3' -57.1 NC_003521.1 + 30813 0.68 0.877647
Target:  5'- aGGGCCCGccGGCGaaacCCGCGAAcuccacgggcgccuuGCGAc -3'
miRNA:   3'- aCUCGGGCa-CCGCaa--GGUGCUU---------------CGCU- -5'
14584 3' -57.1 NC_003521.1 + 36947 0.69 0.813235
Target:  5'- aUGGGCCCGacgcUGGuCGUcgCaGCGGAGCGGg -3'
miRNA:   3'- -ACUCGGGC----ACC-GCAa-GgUGCUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 37510 0.66 0.933878
Target:  5'- cGGGCCCGcggacaucaGCGacgUCCugGggGUGGg -3'
miRNA:   3'- aCUCGGGCac-------CGCa--AGGugCuuCGCU- -5'
14584 3' -57.1 NC_003521.1 + 38306 0.67 0.897354
Target:  5'- aGAGCUCGUcggccagcggguagaGGUGgccgUCCugGggGCa- -3'
miRNA:   3'- aCUCGGGCA---------------CCGCa---AGGugCuuCGcu -5'
14584 3' -57.1 NC_003521.1 + 40481 0.66 0.923822
Target:  5'- aUGuGUCCGcGGCGcgCCACGgcGCc- -3'
miRNA:   3'- -ACuCGGGCaCCGCaaGGUGCuuCGcu -5'
14584 3' -57.1 NC_003521.1 + 44878 0.69 0.821544
Target:  5'- aGAGCCUGUGGC---CCACGcAGGaCGGc -3'
miRNA:   3'- aCUCGGGCACCGcaaGGUGC-UUC-GCU- -5'
14584 3' -57.1 NC_003521.1 + 46171 0.67 0.888391
Target:  5'- cGGGCUCGU--CG-UCCugGAAGCGGa -3'
miRNA:   3'- aCUCGGGCAccGCaAGGugCUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 46396 0.66 0.928961
Target:  5'- gGGGUgCGUGgggcgcGCGggCCAgGAAGCGGc -3'
miRNA:   3'- aCUCGgGCAC------CGCaaGGUgCUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 53211 0.68 0.860565
Target:  5'- gUGAGCUCGccGGgGagUCCgcggGCGAAGCGAc -3'
miRNA:   3'- -ACUCGGGCa-CCgCa-AGG----UGCUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 57109 0.67 0.918463
Target:  5'- aGAgGCCCcagcagccGGCcagcUCCACGAAGCGAu -3'
miRNA:   3'- aCU-CGGGca------CCGca--AGGUGCUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 57322 0.7 0.778553
Target:  5'- aGGGCCCGUGGCGcaugaCCAucugaaagagccUGAAGCu- -3'
miRNA:   3'- aCUCGGGCACCGCaa---GGU------------GCUUCGcu -5'
14584 3' -57.1 NC_003521.1 + 59227 0.67 0.901068
Target:  5'- gGGGCCC-UGGaCGc-CCugGAGGUGAa -3'
miRNA:   3'- aCUCGGGcACC-GCaaGGugCUUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.