miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14584 3' -57.1 NC_003521.1 + 238533 0.67 0.897354
Target:  5'- aGAGCUCGUcggccagcggguagaGGUGgccgUCCugGggGCa- -3'
miRNA:   3'- aCUCGGGCA---------------CCGCa---AGGugCuuCGcu -5'
14584 3' -57.1 NC_003521.1 + 117055 0.69 0.837677
Target:  5'- --cGCCCGaGGCGg-CCGCGGAGCc- -3'
miRNA:   3'- acuCGGGCaCCGCaaGGUGCUUCGcu -5'
14584 3' -57.1 NC_003521.1 + 232346 0.68 0.853119
Target:  5'- gGAGCaguagcagcagUCGcGGCGgcaCCGCGAAGCGGa -3'
miRNA:   3'- aCUCG-----------GGCaCCGCaa-GGUGCUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 224724 0.68 0.860565
Target:  5'- --cGCCCGUGGUGcucgCCgACGcAGGCGGc -3'
miRNA:   3'- acuCGGGCACCGCaa--GG-UGC-UUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 150770 0.68 0.867821
Target:  5'- cGAGCgCGUcGGCG-UCC-CGGAGCu- -3'
miRNA:   3'- aCUCGgGCA-CCGCaAGGuGCUUCGcu -5'
14584 3' -57.1 NC_003521.1 + 30813 0.68 0.877647
Target:  5'- aGGGCCCGccGGCGaaacCCGCGAAcuccacgggcgccuuGCGAc -3'
miRNA:   3'- aCUCGGGCa-CCGCaa--GGUGCUU---------------CGCU- -5'
14584 3' -57.1 NC_003521.1 + 46171 0.67 0.888391
Target:  5'- cGGGCUCGU--CG-UCCugGAAGCGGa -3'
miRNA:   3'- aCUCGGGCAccGCaAGGugCUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 137446 0.67 0.894201
Target:  5'- gGAGCCCGUGGagGUaUCGCGcaccgacGAGUGGa -3'
miRNA:   3'- aCUCGGGCACCg-CAaGGUGC-------UUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 124089 0.67 0.894836
Target:  5'- cGGGCCCGacGGCGUgggCGgGAAGCa- -3'
miRNA:   3'- aCUCGGGCa-CCGCAag-GUgCUUCGcu -5'
14584 3' -57.1 NC_003521.1 + 145862 0.69 0.813235
Target:  5'- cUGGGCCCGgcggcgGGCGgcgCCgacgACGAGGCc- -3'
miRNA:   3'- -ACUCGGGCa-----CCGCaa-GG----UGCUUCGcu -5'
14584 3' -57.1 NC_003521.1 + 129842 0.69 0.813235
Target:  5'- gGGGCCCGUGGCcGUgCCcugcuacuGCGAcgAGUGGg -3'
miRNA:   3'- aCUCGGGCACCG-CAaGG--------UGCU--UCGCU- -5'
14584 3' -57.1 NC_003521.1 + 100593 0.7 0.787425
Target:  5'- gGGGCCgGUGGaCGaggCgGCGAAGCGu -3'
miRNA:   3'- aCUCGGgCACC-GCaa-GgUGCUUCGCu -5'
14584 3' -57.1 NC_003521.1 + 128752 0.76 0.461183
Target:  5'- cGAGCCCGUGGUGUagguggugggguucUCCAgGAugcugucgguGGCGGc -3'
miRNA:   3'- aCUCGGGCACCGCA--------------AGGUgCU----------UCGCU- -5'
14584 3' -57.1 NC_003521.1 + 102853 0.73 0.605948
Target:  5'- gGGcGCCCGUGGCGUaggUCUgggccgugcguaGCGAGGCGc -3'
miRNA:   3'- aCU-CGGGCACCGCA---AGG------------UGCUUCGCu -5'
14584 3' -57.1 NC_003521.1 + 201330 0.72 0.645303
Target:  5'- cGuGCUgGUGGCcaccaucgUCCACGAGGCGGc -3'
miRNA:   3'- aCuCGGgCACCGca------AGGUGCUUCGCU- -5'
14584 3' -57.1 NC_003521.1 + 146622 0.71 0.731589
Target:  5'- cGAGCCCGUcgucgucuucaagGGCcccggCCACGAcgacGGCGAg -3'
miRNA:   3'- aCUCGGGCA-------------CCGcaa--GGUGCU----UCGCU- -5'
14584 3' -57.1 NC_003521.1 + 128129 0.71 0.732534
Target:  5'- gGGGUCCGagGGCGgcCCGCGcucGGCGAa -3'
miRNA:   3'- aCUCGGGCa-CCGCaaGGUGCu--UCGCU- -5'
14584 3' -57.1 NC_003521.1 + 74126 0.7 0.75124
Target:  5'- aUGGGCgCCGUgcaggacgacguGGCGcgCCACGggGCc- -3'
miRNA:   3'- -ACUCG-GGCA------------CCGCaaGGUGCuuCGcu -5'
14584 3' -57.1 NC_003521.1 + 57322 0.7 0.778553
Target:  5'- aGGGCCCGUGGCGcaugaCCAucugaaagagccUGAAGCu- -3'
miRNA:   3'- aCUCGGGCACCGCaa---GGU------------GCUUCGcu -5'
14584 3' -57.1 NC_003521.1 + 72989 0.7 0.778553
Target:  5'- cGAGCCCGcGGCGgucgugCC-CGggGgGGu -3'
miRNA:   3'- aCUCGGGCaCCGCaa----GGuGCuuCgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.