miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14584 5' -53.4 NC_003521.1 + 35018 0.66 0.989271
Target:  5'- cGUCgUgcccgGCGGACGCGGUUgggcacGCUCAUg -3'
miRNA:   3'- cCAGgAag---CGUCUGCGUCAA------CGAGUA- -5'
14584 5' -53.4 NC_003521.1 + 240133 0.66 0.989271
Target:  5'- cGUCCcg-GCGGGCGCGGaaagcgcugGCUCAUg -3'
miRNA:   3'- cCAGGaagCGUCUGCGUCaa-------CGAGUA- -5'
14584 5' -53.4 NC_003521.1 + 85605 0.66 0.987853
Target:  5'- cGGUCCa-CGUAGGCGacg-UGCUCGUc -3'
miRNA:   3'- -CCAGGaaGCGUCUGCgucaACGAGUA- -5'
14584 5' -53.4 NC_003521.1 + 221997 0.66 0.986294
Target:  5'- --gCCUcUCGCGGuuGCGGUcGCUCAg -3'
miRNA:   3'- ccaGGA-AGCGUCugCGUCAaCGAGUa -5'
14584 5' -53.4 NC_003521.1 + 36960 0.66 0.986294
Target:  5'- uGGUCg-UCGCAGcggaGCGGgUGCUCGg -3'
miRNA:   3'- -CCAGgaAGCGUCug--CGUCaACGAGUa -5'
14584 5' -53.4 NC_003521.1 + 72045 0.67 0.970764
Target:  5'- aGGUCCUggUGCAGACcC--UUGCUCAUc -3'
miRNA:   3'- -CCAGGAa-GCGUCUGcGucAACGAGUA- -5'
14584 5' -53.4 NC_003521.1 + 202827 0.68 0.961231
Target:  5'- uGGUCCaaCGaCAGGCGCAGcUGC-CGg -3'
miRNA:   3'- -CCAGGaaGC-GUCUGCGUCaACGaGUa -5'
14584 5' -53.4 NC_003521.1 + 125305 0.68 0.949736
Target:  5'- cGUCgUUCGCGGACGCGGcgGUg--- -3'
miRNA:   3'- cCAGgAAGCGUCUGCGUCaaCGagua -5'
14584 5' -53.4 NC_003521.1 + 152137 0.69 0.935682
Target:  5'- uGGUCCcgUGCAGcaguucgGCGCGGUacucGCUCAUg -3'
miRNA:   3'- -CCAGGaaGCGUC-------UGCGUCAa---CGAGUA- -5'
14584 5' -53.4 NC_003521.1 + 226850 0.69 0.925946
Target:  5'- cGUCCUcgUCGUagucacGGGCGCGGUacuugucgccgUGCUCGUa -3'
miRNA:   3'- cCAGGA--AGCG------UCUGCGUCA-----------ACGAGUA- -5'
14584 5' -53.4 NC_003521.1 + 210495 0.7 0.920477
Target:  5'- --gCCgacUCGCuGGCGCAGUUGCUgGa -3'
miRNA:   3'- ccaGGa--AGCGuCUGCGUCAACGAgUa -5'
14584 5' -53.4 NC_003521.1 + 6487 0.7 0.91477
Target:  5'- aGGUCCggcaGCGGAgGCGGUgacggcagagGCUCAc -3'
miRNA:   3'- -CCAGGaag-CGUCUgCGUCAa---------CGAGUa -5'
14584 5' -53.4 NC_003521.1 + 73537 0.7 0.8896
Target:  5'- aGGaUCCgUCGCAGACGgAGguggUGUUCGa -3'
miRNA:   3'- -CC-AGGaAGCGUCUGCgUCa---ACGAGUa -5'
14584 5' -53.4 NC_003521.1 + 6105 0.7 0.8896
Target:  5'- cGGUCgUgcgagUCGCGGAcaCGCAGUUGC-CAUu -3'
miRNA:   3'- -CCAGgA-----AGCGUCU--GCGUCAACGaGUA- -5'
14584 5' -53.4 NC_003521.1 + 115809 0.7 0.8896
Target:  5'- aGUCCgcCGCucAGGCGCGGgugGCUCAg -3'
miRNA:   3'- cCAGGaaGCG--UCUGCGUCaa-CGAGUa -5'
14584 5' -53.4 NC_003521.1 + 135460 0.7 0.886881
Target:  5'- cGGUCCgccccccgucgaCGCGGACGCAGUgGCgcgCAc -3'
miRNA:   3'- -CCAGGaa----------GCGUCUGCGUCAaCGa--GUa -5'
14584 5' -53.4 NC_003521.1 + 224255 0.71 0.882735
Target:  5'- cGGUCgCcUCGCAGGCGCAGcuuucucGCUUAa -3'
miRNA:   3'- -CCAG-GaAGCGUCUGCGUCaa-----CGAGUa -5'
14584 5' -53.4 NC_003521.1 + 5385 0.71 0.860833
Target:  5'- -uUCCaUUUGCAGACG-GGUUGCUCGg -3'
miRNA:   3'- ccAGG-AAGCGUCUGCgUCAACGAGUa -5'
14584 5' -53.4 NC_003521.1 + 127144 0.74 0.717731
Target:  5'- aGUCCcagccCGCAGGCGCGGUUGUuggUCAUg -3'
miRNA:   3'- cCAGGaa---GCGUCUGCGUCAACG---AGUA- -5'
14584 5' -53.4 NC_003521.1 + 207004 1.08 0.007841
Target:  5'- gGGUCCUUCGCAGACGCAGUUGCUCAUg -3'
miRNA:   3'- -CCAGGAAGCGUCUGCGUCAACGAGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.