miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14585 3' -53.2 NC_003521.1 + 52309 0.66 0.993585
Target:  5'- uGGGGCccgCCGGccUCCUCguaUC-UCGGCGg -3'
miRNA:   3'- gCUCUGa--GGCU--AGGAGa--AGaAGCCGU- -5'
14585 3' -53.2 NC_003521.1 + 154155 0.66 0.989169
Target:  5'- aCGAcGACgcgCUGAUCCUCaaccugUCgUCGGCc -3'
miRNA:   3'- -GCU-CUGa--GGCUAGGAGa-----AGaAGCCGu -5'
14585 3' -53.2 NC_003521.1 + 217080 0.67 0.986216
Target:  5'- uGAucGCUCUGuUCCUCUUCcUCGGUg -3'
miRNA:   3'- gCUc-UGAGGCuAGGAGAAGaAGCCGu -5'
14585 3' -53.2 NC_003521.1 + 232983 0.67 0.982681
Target:  5'- aGAGGCUCUGuAUCgcgaUUCgauagUCUUCGGUAg -3'
miRNA:   3'- gCUCUGAGGC-UAG----GAGa----AGAAGCCGU- -5'
14585 3' -53.2 NC_003521.1 + 68605 0.68 0.976154
Target:  5'- aCGGGACcUCGGcCUUCUUCgacUCGGCGc -3'
miRNA:   3'- -GCUCUGaGGCUaGGAGAAGa--AGCCGU- -5'
14585 3' -53.2 NC_003521.1 + 98529 0.68 0.976154
Target:  5'- uGGGACUCUucGUCCUCUUCUUCc--- -3'
miRNA:   3'- gCUCUGAGGc-UAGGAGAAGAAGccgu -5'
14585 3' -53.2 NC_003521.1 + 130090 0.68 0.967985
Target:  5'- cCGAGuggaacugccaGCUgCCGggCCUCUUCUgccccugcgucgUCGGCGg -3'
miRNA:   3'- -GCUC-----------UGA-GGCuaGGAGAAGA------------AGCCGU- -5'
14585 3' -53.2 NC_003521.1 + 152511 0.7 0.927002
Target:  5'- gCGAGAC-CCGcAUCCUCaUCgaggCGGCc -3'
miRNA:   3'- -GCUCUGaGGC-UAGGAGaAGaa--GCCGu -5'
14585 3' -53.2 NC_003521.1 + 159894 0.71 0.91027
Target:  5'- ----cCUCCGuUCgUCUUCUUCGGCGa -3'
miRNA:   3'- gcucuGAGGCuAGgAGAAGAAGCCGU- -5'
14585 3' -53.2 NC_003521.1 + 149520 0.71 0.891483
Target:  5'- uGGGAC-CCGA-CCUCUUCgagUCGGgCGg -3'
miRNA:   3'- gCUCUGaGGCUaGGAGAAGa--AGCC-GU- -5'
14585 3' -53.2 NC_003521.1 + 221774 0.72 0.848084
Target:  5'- aCGGGAuCUCCGuuucAUCgUCUUCcUCGGCGg -3'
miRNA:   3'- -GCUCU-GAGGC----UAGgAGAAGaAGCCGU- -5'
14585 3' -53.2 NC_003521.1 + 43362 0.76 0.663749
Target:  5'- gCGAGGCcuaCCGcAUCCUCUUCcagaUCGGCAa -3'
miRNA:   3'- -GCUCUGa--GGC-UAGGAGAAGa---AGCCGU- -5'
14585 3' -53.2 NC_003521.1 + 207273 1.09 0.009259
Target:  5'- cCGAGACUCCGAUCCUCUUCUUCGGCAc -3'
miRNA:   3'- -GCUCUGAGGCUAGGAGAAGAAGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.