miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14585 5' -52.6 NC_003521.1 + 31434 0.66 0.993886
Target:  5'- cGCCGCCGAaGAcgacuACGGGGAggacgacuaugaGGGg -3'
miRNA:   3'- -CGGCGGCUaCUu----UGUCCCUaucg--------UCC- -5'
14585 5' -52.6 NC_003521.1 + 38449 0.66 0.993799
Target:  5'- uGCUGCUGcUGGAGCAGGuc-GGCGGc -3'
miRNA:   3'- -CGGCGGCuACUUUGUCCcuaUCGUCc -5'
14585 5' -52.6 NC_003521.1 + 238676 0.66 0.993799
Target:  5'- uGCUGCUGcUGGAGCAGGuc-GGCGGc -3'
miRNA:   3'- -CGGCGGCuACUUUGUCCcuaUCGUCc -5'
14585 5' -52.6 NC_003521.1 + 113095 0.66 0.993799
Target:  5'- gGCCGCCG-UGguGCAGG---AGCGGc -3'
miRNA:   3'- -CGGCGGCuACuuUGUCCcuaUCGUCc -5'
14585 5' -52.6 NC_003521.1 + 116384 0.66 0.993799
Target:  5'- uGCCGCgCGAcguggUGGAACGuugguuGGGUAGCGGcGg -3'
miRNA:   3'- -CGGCG-GCU-----ACUUUGUc-----CCUAUCGUC-C- -5'
14585 5' -52.6 NC_003521.1 + 137248 0.66 0.993799
Target:  5'- gGCCgggGCCGAcgGcgGCAGcGGGcagAGCGGGg -3'
miRNA:   3'- -CGG---CGGCUa-CuuUGUC-CCUa--UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 210344 0.66 0.993799
Target:  5'- aCUGCUGGUGGuGACGGaGG--GGCAGGu -3'
miRNA:   3'- cGGCGGCUACU-UUGUC-CCuaUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 100227 0.66 0.993799
Target:  5'- gGCCGgCGAggUGGAGCuGGGcgAGguGc -3'
miRNA:   3'- -CGGCgGCU--ACUUUGuCCCuaUCguCc -5'
14585 5' -52.6 NC_003521.1 + 207910 0.66 0.993262
Target:  5'- gGCCGCCaccuacgcCGGGGGcGGCGGGc -3'
miRNA:   3'- -CGGCGGcuacuuu-GUCCCUaUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 29749 0.66 0.992884
Target:  5'- cCCGCCGGgcaacgGcGACAGaGcGAgAGCAGGa -3'
miRNA:   3'- cGGCGGCUa-----CuUUGUC-C-CUaUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 193285 0.66 0.992884
Target:  5'- uGCCGggaCGGgcgucgGAGucggcGCGGGGGUGGUGGGc -3'
miRNA:   3'- -CGGCg--GCUa-----CUU-----UGUCCCUAUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 217626 0.66 0.992884
Target:  5'- gGCCGCCaucuccucggcGUGGu-CGGGGGgcaUGGCGGGa -3'
miRNA:   3'- -CGGCGGc----------UACUuuGUCCCU---AUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 128561 0.66 0.992884
Target:  5'- uGCCGCCG-UGAcuCcccuGGGAcGGCGGc -3'
miRNA:   3'- -CGGCGGCuACUuuGu---CCCUaUCGUCc -5'
14585 5' -52.6 NC_003521.1 + 206161 0.66 0.992884
Target:  5'- gGCCuCCGAgaagcccaGGAGCAGGGcgGcCAGGg -3'
miRNA:   3'- -CGGcGGCUa-------CUUUGUCCCuaUcGUCC- -5'
14585 5' -52.6 NC_003521.1 + 237170 0.66 0.992884
Target:  5'- gGCCGCCGAggcAGACGGcGGcggccGUGGCAc- -3'
miRNA:   3'- -CGGCGGCUac-UUUGUC-CC-----UAUCGUcc -5'
14585 5' -52.6 NC_003521.1 + 127959 0.66 0.992884
Target:  5'- gGCCaGCCGcgGGAGCAgcuGGGGcAGCucGGc -3'
miRNA:   3'- -CGG-CGGCuaCUUUGU---CCCUaUCGu-CC- -5'
14585 5' -52.6 NC_003521.1 + 214161 0.66 0.992786
Target:  5'- aGCCGCgGAUGGcuuggucGACGGGcaguucGGUGGCAa- -3'
miRNA:   3'- -CGGCGgCUACU-------UUGUCC------CUAUCGUcc -5'
14585 5' -52.6 NC_003521.1 + 118219 0.66 0.992589
Target:  5'- gGCCGCCGccGucGCcGGGGUGGUcaaugccucgugucGGGu -3'
miRNA:   3'- -CGGCGGCuaCuuUGuCCCUAUCG--------------UCC- -5'
14585 5' -52.6 NC_003521.1 + 143544 0.66 0.992589
Target:  5'- cGCCGCCGgcGAcgAGCAGcagccgccaucgcuGGcgGGCAcGGg -3'
miRNA:   3'- -CGGCGGCuaCU--UUGUC--------------CCuaUCGU-CC- -5'
14585 5' -52.6 NC_003521.1 + 49764 0.67 0.991863
Target:  5'- gGUCGCCGcgGGAACAGaacugagcgucGGccAGCAGa -3'
miRNA:   3'- -CGGCGGCuaCUUUGUC-----------CCuaUCGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.