miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14586 5' -46.5 NC_003521.1 + 56990 0.66 0.999996
Target:  5'- -aCUggGUGAaAGGCGcGugGAucgUGUCg -3'
miRNA:   3'- aaGAaaUACUaUCCGCaCugCU---ACAG- -5'
14586 5' -46.5 NC_003521.1 + 39384 0.66 0.999995
Target:  5'- gUCUgac-GGUaAGGCGgGGCGAUGUUg -3'
miRNA:   3'- aAGAaauaCUA-UCCGCaCUGCUACAG- -5'
14586 5' -46.5 NC_003521.1 + 67014 0.67 0.999979
Target:  5'- -----cGUGGUcucggucaaguacaAGGCaGUGACGGUGUCc -3'
miRNA:   3'- aagaaaUACUA--------------UCCG-CACUGCUACAG- -5'
14586 5' -46.5 NC_003521.1 + 98014 0.67 0.999952
Target:  5'- -------aGAgggAGGUgGUGACGAUGUCg -3'
miRNA:   3'- aagaaauaCUa--UCCG-CACUGCUACAG- -5'
14586 5' -46.5 NC_003521.1 + 110227 0.68 0.999889
Target:  5'- cUCUUUGaGGUAGGgGUGcCGGUG-Ca -3'
miRNA:   3'- aAGAAAUaCUAUCCgCACuGCUACaG- -5'
14586 5' -46.5 NC_003521.1 + 51554 0.68 0.999889
Target:  5'- aUCUUgGUGGcucggAGGCGaGACGAgUGUCg -3'
miRNA:   3'- aAGAAaUACUa----UCCGCaCUGCU-ACAG- -5'
14586 5' -46.5 NC_003521.1 + 82104 0.68 0.999813
Target:  5'- -----cGUGAUAGGCcacaaaGACGGUGUCc -3'
miRNA:   3'- aagaaaUACUAUCCGca----CUGCUACAG- -5'
14586 5' -46.5 NC_003521.1 + 170942 0.69 0.999615
Target:  5'- gUUCUcUAUGGccUGGGCGUGGCGcUG-Cg -3'
miRNA:   3'- -AAGAaAUACU--AUCCGCACUGCuACaG- -5'
14586 5' -46.5 NC_003521.1 + 168022 0.69 0.999516
Target:  5'- -gCUggugGUGGUAGGCGUG-CGG-GUCu -3'
miRNA:   3'- aaGAaa--UACUAUCCGCACuGCUaCAG- -5'
14586 5' -46.5 NC_003521.1 + 28490 0.71 0.997614
Target:  5'- -----gGUGAUGGGCGUGACc--GUCg -3'
miRNA:   3'- aagaaaUACUAUCCGCACUGcuaCAG- -5'
14586 5' -46.5 NC_003521.1 + 207749 1.09 0.035083
Target:  5'- aUUCUUUAUGAUAGGCGUGACGAUGUCu -3'
miRNA:   3'- -AAGAAAUACUAUCCGCACUGCUACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.