miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14587 3' -54.1 NC_003521.1 + 113581 0.66 0.984525
Target:  5'- gGUGGGGcUGGGCcucgGGGGCaACgggGGCGg -3'
miRNA:   3'- gCACCCUaACUCG----UUCCGgUGa--CUGC- -5'
14587 3' -54.1 NC_003521.1 + 186545 0.67 0.964867
Target:  5'- cCGUGGGA---GGCAGGGCCGgc-ACGa -3'
miRNA:   3'- -GCACCCUaacUCGUUCCGGUgacUGC- -5'
14587 3' -54.1 NC_003521.1 + 119907 0.67 0.973622
Target:  5'- gGUGGGccugGAaCAGGuggauGCCGCUGACGg -3'
miRNA:   3'- gCACCCuaa-CUcGUUC-----CGGUGACUGC- -5'
14587 3' -54.1 NC_003521.1 + 4128 0.67 0.976154
Target:  5'- gGUGGGAUacggGAGCG-GGCCGgcGGCu -3'
miRNA:   3'- gCACCCUAa---CUCGUuCCGGUgaCUGc -5'
14587 3' -54.1 NC_003521.1 + 84766 0.67 0.976154
Target:  5'- uCGaUGucGUUGAGCGuGGCCagGCUGACGc -3'
miRNA:   3'- -GC-ACccUAACUCGUuCCGG--UGACUGC- -5'
14587 3' -54.1 NC_003521.1 + 215241 0.66 0.977585
Target:  5'- cCGUcaGGGugaaGAGCGAGGCCGCcaacagcuggaagGGCGa -3'
miRNA:   3'- -GCA--CCCuaa-CUCGUUCCGGUGa------------CUGC- -5'
14587 3' -54.1 NC_003521.1 + 129219 0.66 0.980676
Target:  5'- gCGUGG---UGGGCAguccGGcGCCGCUGGCc -3'
miRNA:   3'- -GCACCcuaACUCGU----UC-CGGUGACUGc -5'
14587 3' -54.1 NC_003521.1 + 3759 0.66 0.980676
Target:  5'- --cGGGAUgGAGCGA-GCC-CUGAUGu -3'
miRNA:   3'- gcaCCCUAaCUCGUUcCGGuGACUGC- -5'
14587 3' -54.1 NC_003521.1 + 168422 0.66 0.982681
Target:  5'- --aGGGcggGcGGCAGGGCCGCggcGGCGg -3'
miRNA:   3'- gcaCCCuaaC-UCGUUCCGGUGa--CUGC- -5'
14587 3' -54.1 NC_003521.1 + 121321 0.67 0.964867
Target:  5'- uCGUGGGA---GGUgAAGGCCACguccagcaUGACGu -3'
miRNA:   3'- -GCACCCUaacUCG-UUCCGGUG--------ACUGC- -5'
14587 3' -54.1 NC_003521.1 + 164674 0.68 0.961541
Target:  5'- aCGUGGuGAaccccgUGAcGaCGAGGCCggcgGCUGACGa -3'
miRNA:   3'- -GCACC-CUa-----ACU-C-GUUCCGG----UGACUGC- -5'
14587 3' -54.1 NC_003521.1 + 77666 0.68 0.961197
Target:  5'- cCGUcGGGAgacAGCAggccgggGGGCaCGCUGGCGa -3'
miRNA:   3'- -GCA-CCCUaacUCGU-------UCCG-GUGACUGC- -5'
14587 3' -54.1 NC_003521.1 + 154802 0.73 0.788978
Target:  5'- uGUGGGAgc--GCAAGGCCucGCUGgACGa -3'
miRNA:   3'- gCACCCUaacuCGUUCCGG--UGAC-UGC- -5'
14587 3' -54.1 NC_003521.1 + 102019 0.72 0.832039
Target:  5'- gCGUGG--UUGAGCAccuGGGCCAC-GGCGc -3'
miRNA:   3'- -GCACCcuAACUCGU---UCCGGUGaCUGC- -5'
14587 3' -54.1 NC_003521.1 + 130273 0.71 0.868533
Target:  5'- aCGUGGGcgcccucuccggcuAccUGGGCGAGGCCGC-GGCGc -3'
miRNA:   3'- -GCACCC--------------Ua-ACUCGUUCCGGUGaCUGC- -5'
14587 3' -54.1 NC_003521.1 + 109735 0.7 0.877147
Target:  5'- gGUGGGAcUUGuGCAGGGUCaccgcaaACUGGCc -3'
miRNA:   3'- gCACCCU-AACuCGUUCCGG-------UGACUGc -5'
14587 3' -54.1 NC_003521.1 + 219258 0.7 0.903617
Target:  5'- --cGGGua-GAGCAGGGCCcgcagggGCUGGCa -3'
miRNA:   3'- gcaCCCuaaCUCGUUCCGG-------UGACUGc -5'
14587 3' -54.1 NC_003521.1 + 46029 0.68 0.941654
Target:  5'- aCGUGGGGagGAGUgAGGGgCGCcaUGACGu -3'
miRNA:   3'- -GCACCCUaaCUCG-UUCCgGUG--ACUGC- -5'
14587 3' -54.1 NC_003521.1 + 100685 0.68 0.941654
Target:  5'- aGUGGuGAUgcUGAuGCGGaggcgccgccgcGGCCGCUGAUGg -3'
miRNA:   3'- gCACC-CUA--ACU-CGUU------------CCGGUGACUGC- -5'
14587 3' -54.1 NC_003521.1 + 124199 0.68 0.946078
Target:  5'- -cUGGGggUGAGC-GGGCCcuuuCUGGCc -3'
miRNA:   3'- gcACCCuaACUCGuUCCGGu---GACUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.