miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14588 5' -55.1 NC_003521.1 + 180729 0.66 0.981616
Target:  5'- cCCGGGUGgaagaaGAGCcGUUCGgGCGUCa- -3'
miRNA:   3'- -GGCCCGCa-----CUUGuCAGGCaCGUAGac -5'
14588 5' -55.1 NC_003521.1 + 30238 0.66 0.979555
Target:  5'- aCGGGCGUGGAUA--CCG-GCcgCUa -3'
miRNA:   3'- gGCCCGCACUUGUcaGGCaCGuaGAc -5'
14588 5' -55.1 NC_003521.1 + 199679 0.66 0.977327
Target:  5'- gUGGGCGUcGAGUAG-CCGUGCAcgUGg -3'
miRNA:   3'- gGCCCGCA-CUUGUCaGGCACGUagAC- -5'
14588 5' -55.1 NC_003521.1 + 55797 0.66 0.977327
Target:  5'- -aGGGgGUGAuCAGgugaCgGUGUAUCUGu -3'
miRNA:   3'- ggCCCgCACUuGUCa---GgCACGUAGAC- -5'
14588 5' -55.1 NC_003521.1 + 106116 0.66 0.972343
Target:  5'- aCGGGCGUG-GCGG-CCGUggGCAcCUa -3'
miRNA:   3'- gGCCCGCACuUGUCaGGCA--CGUaGAc -5'
14588 5' -55.1 NC_003521.1 + 212071 0.67 0.966613
Target:  5'- -aGGGCGgugGcGCGGcCCGcgcGCGUCUGg -3'
miRNA:   3'- ggCCCGCa--CuUGUCaGGCa--CGUAGAC- -5'
14588 5' -55.1 NC_003521.1 + 121537 0.67 0.960093
Target:  5'- aCGGGCGaGAAC--UCCGUGCGaaUCg- -3'
miRNA:   3'- gGCCCGCaCUUGucAGGCACGU--AGac -5'
14588 5' -55.1 NC_003521.1 + 125044 0.67 0.956524
Target:  5'- uCCGcGCGUGu--GGUCCGUGUA-CUGg -3'
miRNA:   3'- -GGCcCGCACuugUCAGGCACGUaGAC- -5'
14588 5' -55.1 NC_003521.1 + 196460 0.67 0.956524
Target:  5'- cUCGGGCGUGGgccGCAGcCCcagcGCGUCg- -3'
miRNA:   3'- -GGCCCGCACU---UGUCaGGca--CGUAGac -5'
14588 5' -55.1 NC_003521.1 + 102086 0.67 0.952744
Target:  5'- -aGGGCGUGAugaugcGCAGgcccagcuucUCCGUGCAg--- -3'
miRNA:   3'- ggCCCGCACU------UGUC----------AGGCACGUagac -5'
14588 5' -55.1 NC_003521.1 + 197433 0.68 0.944536
Target:  5'- -aGGGCGcGGGCgAGUCCGaguUGCcgAUCUGg -3'
miRNA:   3'- ggCCCGCaCUUG-UCAGGC---ACG--UAGAC- -5'
14588 5' -55.1 NC_003521.1 + 106407 0.68 0.940102
Target:  5'- -gGuGGCGUGAAgagguucugaaAGUCCGUGUcgCUGg -3'
miRNA:   3'- ggC-CCGCACUUg----------UCAGGCACGuaGAC- -5'
14588 5' -55.1 NC_003521.1 + 186298 0.68 0.930567
Target:  5'- gCCGGGCcccAGCGGcgCCGUGCAgaucCUGg -3'
miRNA:   3'- -GGCCCGcacUUGUCa-GGCACGUa---GAC- -5'
14588 5' -55.1 NC_003521.1 + 172081 0.69 0.914583
Target:  5'- aCCGucagcggcGGCGUGAugAaGUCCGUGCGg--- -3'
miRNA:   3'- -GGC--------CCGCACUugU-CAGGCACGUagac -5'
14588 5' -55.1 NC_003521.1 + 153423 0.69 0.896598
Target:  5'- cCUGGGCGUGAGCG--UCG-GCGUCa- -3'
miRNA:   3'- -GGCCCGCACUUGUcaGGCaCGUAGac -5'
14588 5' -55.1 NC_003521.1 + 218786 0.7 0.882846
Target:  5'- aUGGGCGcgGAaaACAGUCCGUcuuaucgGCGUCg- -3'
miRNA:   3'- gGCCCGCa-CU--UGUCAGGCA-------CGUAGac -5'
14588 5' -55.1 NC_003521.1 + 224440 0.7 0.8549
Target:  5'- gUGGGC--GAGCGGUCCagGUGCGUCUu -3'
miRNA:   3'- gGCCCGcaCUUGUCAGG--CACGUAGAc -5'
14588 5' -55.1 NC_003521.1 + 228041 0.71 0.847257
Target:  5'- gUCGguGGCGUuaagcgGAGCGGUUCgGUGCGUCUGg -3'
miRNA:   3'- -GGC--CCGCA------CUUGUCAGG-CACGUAGAC- -5'
14588 5' -55.1 NC_003521.1 + 135961 0.71 0.83143
Target:  5'- -aGGGCGUGGACAGggUCGUG-AUCUc -3'
miRNA:   3'- ggCCCGCACUUGUCa-GGCACgUAGAc -5'
14588 5' -55.1 NC_003521.1 + 91696 0.72 0.78901
Target:  5'- cCUGGGCGUGcuGCGGUCugCGUGCcgCUc -3'
miRNA:   3'- -GGCCCGCACu-UGUCAG--GCACGuaGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.