Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14588 | 5' | -55.1 | NC_003521.1 | + | 180729 | 0.66 | 0.981616 |
Target: 5'- cCCGGGUGgaagaaGAGCcGUUCGgGCGUCa- -3' miRNA: 3'- -GGCCCGCa-----CUUGuCAGGCaCGUAGac -5' |
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14588 | 5' | -55.1 | NC_003521.1 | + | 30238 | 0.66 | 0.979555 |
Target: 5'- aCGGGCGUGGAUA--CCG-GCcgCUa -3' miRNA: 3'- gGCCCGCACUUGUcaGGCaCGuaGAc -5' |
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14588 | 5' | -55.1 | NC_003521.1 | + | 199679 | 0.66 | 0.977327 |
Target: 5'- gUGGGCGUcGAGUAG-CCGUGCAcgUGg -3' miRNA: 3'- gGCCCGCA-CUUGUCaGGCACGUagAC- -5' |
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14588 | 5' | -55.1 | NC_003521.1 | + | 55797 | 0.66 | 0.977327 |
Target: 5'- -aGGGgGUGAuCAGgugaCgGUGUAUCUGu -3' miRNA: 3'- ggCCCgCACUuGUCa---GgCACGUAGAC- -5' |
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14588 | 5' | -55.1 | NC_003521.1 | + | 106116 | 0.66 | 0.972343 |
Target: 5'- aCGGGCGUG-GCGG-CCGUggGCAcCUa -3' miRNA: 3'- gGCCCGCACuUGUCaGGCA--CGUaGAc -5' |
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14588 | 5' | -55.1 | NC_003521.1 | + | 212071 | 0.67 | 0.966613 |
Target: 5'- -aGGGCGgugGcGCGGcCCGcgcGCGUCUGg -3' miRNA: 3'- ggCCCGCa--CuUGUCaGGCa--CGUAGAC- -5' |
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14588 | 5' | -55.1 | NC_003521.1 | + | 121537 | 0.67 | 0.960093 |
Target: 5'- aCGGGCGaGAAC--UCCGUGCGaaUCg- -3' miRNA: 3'- gGCCCGCaCUUGucAGGCACGU--AGac -5' |
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14588 | 5' | -55.1 | NC_003521.1 | + | 125044 | 0.67 | 0.956524 |
Target: 5'- uCCGcGCGUGu--GGUCCGUGUA-CUGg -3' miRNA: 3'- -GGCcCGCACuugUCAGGCACGUaGAC- -5' |
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14588 | 5' | -55.1 | NC_003521.1 | + | 196460 | 0.67 | 0.956524 |
Target: 5'- cUCGGGCGUGGgccGCAGcCCcagcGCGUCg- -3' miRNA: 3'- -GGCCCGCACU---UGUCaGGca--CGUAGac -5' |
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14588 | 5' | -55.1 | NC_003521.1 | + | 102086 | 0.67 | 0.952744 |
Target: 5'- -aGGGCGUGAugaugcGCAGgcccagcuucUCCGUGCAg--- -3' miRNA: 3'- ggCCCGCACU------UGUC----------AGGCACGUagac -5' |
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14588 | 5' | -55.1 | NC_003521.1 | + | 197433 | 0.68 | 0.944536 |
Target: 5'- -aGGGCGcGGGCgAGUCCGaguUGCcgAUCUGg -3' miRNA: 3'- ggCCCGCaCUUG-UCAGGC---ACG--UAGAC- -5' |
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14588 | 5' | -55.1 | NC_003521.1 | + | 106407 | 0.68 | 0.940102 |
Target: 5'- -gGuGGCGUGAAgagguucugaaAGUCCGUGUcgCUGg -3' miRNA: 3'- ggC-CCGCACUUg----------UCAGGCACGuaGAC- -5' |
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14588 | 5' | -55.1 | NC_003521.1 | + | 186298 | 0.68 | 0.930567 |
Target: 5'- gCCGGGCcccAGCGGcgCCGUGCAgaucCUGg -3' miRNA: 3'- -GGCCCGcacUUGUCa-GGCACGUa---GAC- -5' |
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14588 | 5' | -55.1 | NC_003521.1 | + | 172081 | 0.69 | 0.914583 |
Target: 5'- aCCGucagcggcGGCGUGAugAaGUCCGUGCGg--- -3' miRNA: 3'- -GGC--------CCGCACUugU-CAGGCACGUagac -5' |
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14588 | 5' | -55.1 | NC_003521.1 | + | 153423 | 0.69 | 0.896598 |
Target: 5'- cCUGGGCGUGAGCG--UCG-GCGUCa- -3' miRNA: 3'- -GGCCCGCACUUGUcaGGCaCGUAGac -5' |
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14588 | 5' | -55.1 | NC_003521.1 | + | 218786 | 0.7 | 0.882846 |
Target: 5'- aUGGGCGcgGAaaACAGUCCGUcuuaucgGCGUCg- -3' miRNA: 3'- gGCCCGCa-CU--UGUCAGGCA-------CGUAGac -5' |
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14588 | 5' | -55.1 | NC_003521.1 | + | 224440 | 0.7 | 0.8549 |
Target: 5'- gUGGGC--GAGCGGUCCagGUGCGUCUu -3' miRNA: 3'- gGCCCGcaCUUGUCAGG--CACGUAGAc -5' |
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14588 | 5' | -55.1 | NC_003521.1 | + | 228041 | 0.71 | 0.847257 |
Target: 5'- gUCGguGGCGUuaagcgGAGCGGUUCgGUGCGUCUGg -3' miRNA: 3'- -GGC--CCGCA------CUUGUCAGG-CACGUAGAC- -5' |
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14588 | 5' | -55.1 | NC_003521.1 | + | 135961 | 0.71 | 0.83143 |
Target: 5'- -aGGGCGUGGACAGggUCGUG-AUCUc -3' miRNA: 3'- ggCCCGCACUUGUCa-GGCACgUAGAc -5' |
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14588 | 5' | -55.1 | NC_003521.1 | + | 91696 | 0.72 | 0.78901 |
Target: 5'- cCUGGGCGUGcuGCGGUCugCGUGCcgCUc -3' miRNA: 3'- -GGCCCGCACu-UGUCAG--GCACGuaGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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