Results 61 - 80 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14589 | 5' | -54.2 | NC_003521.1 | + | 143518 | 0.67 | 0.974525 |
Target: 5'- uGGAUGUCgggC-CUGauccgcacgcGCGCCGCCGgCGa -3' miRNA: 3'- -CCUACAGaa-GcGAC----------UGUGGCGGCaGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 122721 | 0.67 | 0.974525 |
Target: 5'- aGGcgGUCguggUCGUgggcgacGGCGCCGCCGa-- -3' miRNA: 3'- -CCuaCAGa---AGCGa------CUGUGGCGGCagc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 165266 | 0.67 | 0.979214 |
Target: 5'- aGGAgGg---CGCUGGCguaGCCGCCGcCGg -3' miRNA: 3'- -CCUaCagaaGCGACUG---UGGCGGCaGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 84767 | 0.67 | 0.979214 |
Target: 5'- cGGcgG-CgacgUUGUUGGCACCGCCGa-- -3' miRNA: 3'- -CCuaCaGa---AGCGACUGUGGCGGCagc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 204740 | 0.67 | 0.979214 |
Target: 5'- aGGGUGgugaUGgaGGCGCCGCCGcCGc -3' miRNA: 3'- -CCUACagaaGCgaCUGUGGCGGCaGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 88264 | 0.67 | 0.981302 |
Target: 5'- cGGUGgag-CGCgUGACGCUGCCGUa- -3' miRNA: 3'- cCUACagaaGCG-ACUGUGGCGGCAgc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 77444 | 0.66 | 0.990705 |
Target: 5'- aGGAUGcCgcCGUuggugcccgUGACACUGCCGcCGc -3' miRNA: 3'- -CCUACaGaaGCG---------ACUGUGGCGGCaGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 46501 | 0.66 | 0.990588 |
Target: 5'- cGGggGUCUUCuugggguGCUGGCACacgGgCGUCu -3' miRNA: 3'- -CCuaCAGAAG-------CGACUGUGg--CgGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 193331 | 0.66 | 0.989473 |
Target: 5'- gGGGUGgucgcCUUCGUucccaUGuCGCCGCuCGUCu -3' miRNA: 3'- -CCUACa----GAAGCG-----ACuGUGGCG-GCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 140853 | 0.66 | 0.989212 |
Target: 5'- uGGAgcgCUUCGCggucucggccgaGGCGCCGCCGcCc -3' miRNA: 3'- -CCUacaGAAGCGa-----------CUGUGGCGGCaGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 123501 | 0.66 | 0.988117 |
Target: 5'- gGGGUGUCgUCGUcGcCGCUGCCGcCc -3' miRNA: 3'- -CCUACAGaAGCGaCuGUGGCGGCaGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 46071 | 0.66 | 0.988117 |
Target: 5'- gGGAUGaggUCGC-GACGcCCGgCGUCGc -3' miRNA: 3'- -CCUACagaAGCGaCUGU-GGCgGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 78656 | 0.66 | 0.990822 |
Target: 5'- cGAUGUCgucgggcuucucggCGCagggGAaGCCGCCGUCu -3' miRNA: 3'- cCUACAGaa------------GCGa---CUgUGGCGGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 203806 | 0.66 | 0.988117 |
Target: 5'- aGGAcuccUGUCggUC-CUGACuCCGCCG-CGa -3' miRNA: 3'- -CCU----ACAGa-AGcGACUGuGGCGGCaGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 187992 | 0.66 | 0.988117 |
Target: 5'- ---cGUCgaUGCUGucgaucucCACCGCCGUCu -3' miRNA: 3'- ccuaCAGaaGCGACu-------GUGGCGGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 114497 | 0.66 | 0.988117 |
Target: 5'- uGGGUG-CUgucCGUcGugGCCGCCGUg- -3' miRNA: 3'- -CCUACaGAa--GCGaCugUGGCGGCAgc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 184915 | 0.66 | 0.988117 |
Target: 5'- --------cCGUUGcCGCCGCCGUCGg -3' miRNA: 3'- ccuacagaaGCGACuGUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 164469 | 0.66 | 0.988117 |
Target: 5'- ---gGUCgcCGCUGcCGCCGCCG-Ca -3' miRNA: 3'- ccuaCAGaaGCGACuGUGGCGGCaGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 39005 | 0.66 | 0.98663 |
Target: 5'- aGGUGUCgaggccggaGCgGGCGCCGCCGa-- -3' miRNA: 3'- cCUACAGaag------CGaCUGUGGCGGCagc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 165176 | 0.66 | 0.989473 |
Target: 5'- uGGUGggaCUgcgcCGCUGuuGCCGUCGUCa -3' miRNA: 3'- cCUACa--GAa---GCGACugUGGCGGCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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