miRNA display CGI


Results 61 - 80 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 5' -54.2 NC_003521.1 + 179975 0.7 0.9078
Target:  5'- uGGggGUCUUUGUUcAUgcucucgcggGCCGCCGUCGu -3'
miRNA:   3'- -CCuaCAGAAGCGAcUG----------UGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 139782 0.71 0.885047
Target:  5'- cGGAUGgguuuggcgucgcccUCggCGgUGGCgaaGCCGCCGUCGa -3'
miRNA:   3'- -CCUAC---------------AGaaGCgACUG---UGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 165794 0.72 0.838021
Target:  5'- --------cCGCUGGCGCUGCCGUCGc -3'
miRNA:   3'- ccuacagaaGCGACUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 214733 0.67 0.974525
Target:  5'- --cUGUCUggGCUucggucaGCGCCGCCGUCu -3'
miRNA:   3'- ccuACAGAagCGAc------UGUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 127220 0.67 0.974525
Target:  5'- ---cGUCgUCGCUGGCGCgGUgGUCc -3'
miRNA:   3'- ccuaCAGaAGCGACUGUGgCGgCAGc -5'
14589 5' -54.2 NC_003521.1 + 226370 0.67 0.974525
Target:  5'- gGGAg--CggCgGCUGACGCCGCCG-Ca -3'
miRNA:   3'- -CCUacaGaaG-CGACUGUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 26883 0.66 0.988117
Target:  5'- uGAUGg---CGCggagcagGugACCGCCGUCc -3'
miRNA:   3'- cCUACagaaGCGa------CugUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 203806 0.66 0.988117
Target:  5'- aGGAcuccUGUCggUC-CUGACuCCGCCG-CGa -3'
miRNA:   3'- -CCU----ACAGa-AGcGACUGuGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 187992 0.66 0.988117
Target:  5'- ---cGUCgaUGCUGucgaucucCACCGCCGUCu -3'
miRNA:   3'- ccuaCAGaaGCGACu-------GUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 184915 0.66 0.988117
Target:  5'- --------cCGUUGcCGCCGCCGUCGg -3'
miRNA:   3'- ccuacagaaGCGACuGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 164469 0.66 0.988117
Target:  5'- ---gGUCgcCGCUGcCGCCGCCG-Ca -3'
miRNA:   3'- ccuaCAGaaGCGACuGUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 114497 0.66 0.988117
Target:  5'- uGGGUG-CUgucCGUcGugGCCGCCGUg- -3'
miRNA:   3'- -CCUACaGAa--GCGaCugUGGCGGCAgc -5'
14589 5' -54.2 NC_003521.1 + 39005 0.66 0.98663
Target:  5'- aGGUGUCgaggccggaGCgGGCGCCGCCGa-- -3'
miRNA:   3'- cCUACAGaag------CGaCUGUGGCGGCagc -5'
14589 5' -54.2 NC_003521.1 + 46808 0.66 0.985003
Target:  5'- ---gGUCUgga-UGACGCCGCCGcCGg -3'
miRNA:   3'- ccuaCAGAagcgACUGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 55860 0.66 0.985003
Target:  5'- ---gGUCcaCGCUGgcccGCACCGCCG-CGa -3'
miRNA:   3'- ccuaCAGaaGCGAC----UGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 47132 0.66 0.98323
Target:  5'- uGGAgGUCaUCGUagcaauaGACGCCGCCG-CGc -3'
miRNA:   3'- -CCUaCAGaAGCGa------CUGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 35513 0.67 0.979214
Target:  5'- aGGGUGUCgaggugUCGaaaCUGGucCGCCauGCCGUCGu -3'
miRNA:   3'- -CCUACAGa-----AGC---GACU--GUGG--CGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 232392 0.67 0.979214
Target:  5'- ---cGUCUcgCGCUGGCugCGCCuG-CGg -3'
miRNA:   3'- ccuaCAGAa-GCGACUGugGCGG-CaGC- -5'
14589 5' -54.2 NC_003521.1 + 220944 0.67 0.976957
Target:  5'- aGGA--UCagCGCcGACGCgGCCGUCa -3'
miRNA:   3'- -CCUacAGaaGCGaCUGUGgCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 223769 0.67 0.976957
Target:  5'- ---cGUCcUCGCUGuCGgCGCCGUUa -3'
miRNA:   3'- ccuaCAGaAGCGACuGUgGCGGCAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.