miRNA display CGI


Results 81 - 94 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 5' -54.2 NC_003521.1 + 46071 0.66 0.988117
Target:  5'- gGGAUGaggUCGC-GACGcCCGgCGUCGc -3'
miRNA:   3'- -CCUACagaAGCGaCUGU-GGCgGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 55860 0.66 0.985003
Target:  5'- ---gGUCcaCGCUGgcccGCACCGCCG-CGa -3'
miRNA:   3'- ccuaCAGaaGCGAC----UGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 6013 0.66 0.98323
Target:  5'- ---cGUCUUCGUcauCGCUGUCGUCGu -3'
miRNA:   3'- ccuaCAGAAGCGacuGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 168956 0.66 0.98323
Target:  5'- --cUGUCgccgUCGCUccCGCUGCUGUCGc -3'
miRNA:   3'- ccuACAGa---AGCGAcuGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 127220 0.67 0.974525
Target:  5'- ---cGUCgUCGCUGGCGCgGUgGUCc -3'
miRNA:   3'- ccuaCAGaAGCGACUGUGgCGgCAGc -5'
14589 5' -54.2 NC_003521.1 + 226370 0.67 0.974525
Target:  5'- gGGAg--CggCgGCUGACGCCGCCG-Ca -3'
miRNA:   3'- -CCUacaGaaG-CGACUGUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 223769 0.67 0.976957
Target:  5'- ---cGUCcUCGCUGuCGgCGCCGUUa -3'
miRNA:   3'- ccuaCAGaAGCGACuGUgGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 220944 0.67 0.976957
Target:  5'- aGGA--UCagCGCcGACGCgGCCGUCa -3'
miRNA:   3'- -CCUacAGaaGCGaCUGUGgCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 232392 0.67 0.979214
Target:  5'- ---cGUCUcgCGCUGGCugCGCCuG-CGg -3'
miRNA:   3'- ccuaCAGAa-GCGACUGugGCGG-CaGC- -5'
14589 5' -54.2 NC_003521.1 + 35513 0.67 0.979214
Target:  5'- aGGGUGUCgaggugUCGaaaCUGGucCGCCauGCCGUCGu -3'
miRNA:   3'- -CCUACAGa-----AGC---GACU--GUGG--CGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 199361 0.67 0.979214
Target:  5'- gGGAUGUCUUCGCgUGGuccgaggaguaUAgUGuuGUCGu -3'
miRNA:   3'- -CCUACAGAAGCG-ACU-----------GUgGCggCAGC- -5'
14589 5' -54.2 NC_003521.1 + 210881 0.67 0.979214
Target:  5'- aGGGUGUacgUCGCcucgGugGCCGUCGcCa -3'
miRNA:   3'- -CCUACAga-AGCGa---CugUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 3625 0.67 0.980693
Target:  5'- aGGAUGUUgUUGUUcucuagcgugccacGGcCGCCGCCGUCu -3'
miRNA:   3'- -CCUACAGaAGCGA--------------CU-GUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 123501 0.66 0.988117
Target:  5'- gGGGUGUCgUCGUcGcCGCUGCCGcCc -3'
miRNA:   3'- -CCUACAGaAGCGaCuGUGGCGGCaGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.