Results 1 - 20 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14589 | 5' | -54.2 | NC_003521.1 | + | 164469 | 0.66 | 0.988117 |
Target: 5'- ---gGUCgcCGCUGcCGCCGCCG-Ca -3' miRNA: 3'- ccuaCAGaaGCGACuGUGGCGGCaGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 46808 | 0.66 | 0.985003 |
Target: 5'- ---gGUCUgga-UGACGCCGCCGcCGg -3' miRNA: 3'- ccuaCAGAagcgACUGUGGCGGCaGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 39005 | 0.66 | 0.98663 |
Target: 5'- aGGUGUCgaggccggaGCgGGCGCCGCCGa-- -3' miRNA: 3'- cCUACAGaag------CGaCUGUGGCGGCagc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 114497 | 0.66 | 0.988117 |
Target: 5'- uGGGUG-CUgucCGUcGugGCCGCCGUg- -3' miRNA: 3'- -CCUACaGAa--GCGaCugUGGCGGCAgc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 140853 | 0.66 | 0.989212 |
Target: 5'- uGGAgcgCUUCGCggucucggccgaGGCGCCGCCGcCc -3' miRNA: 3'- -CCUacaGAAGCGa-----------CUGUGGCGGCaGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 26883 | 0.66 | 0.988117 |
Target: 5'- uGAUGg---CGCggagcagGugACCGCCGUCc -3' miRNA: 3'- cCUACagaaGCGa------CugUGGCGGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 168956 | 0.66 | 0.98323 |
Target: 5'- --cUGUCgccgUCGCUccCGCUGCUGUCGc -3' miRNA: 3'- ccuACAGa---AGCGAcuGUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 6013 | 0.66 | 0.98323 |
Target: 5'- ---cGUCUUCGUcauCGCUGUCGUCGu -3' miRNA: 3'- ccuaCAGAAGCGacuGUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 47132 | 0.66 | 0.98323 |
Target: 5'- uGGAgGUCaUCGUagcaauaGACGCCGCCG-CGc -3' miRNA: 3'- -CCUaCAGaAGCGa------CUGUGGCGGCaGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 55860 | 0.66 | 0.985003 |
Target: 5'- ---gGUCcaCGCUGgcccGCACCGCCG-CGa -3' miRNA: 3'- ccuaCAGaaGCGAC----UGUGGCGGCaGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 129013 | 0.66 | 0.985003 |
Target: 5'- ----aUC-UCGCUGGCGCCGCCa--- -3' miRNA: 3'- ccuacAGaAGCGACUGUGGCGGcagc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 203806 | 0.66 | 0.988117 |
Target: 5'- aGGAcuccUGUCggUC-CUGACuCCGCCG-CGa -3' miRNA: 3'- -CCU----ACAGa-AGcGACUGuGGCGGCaGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 184915 | 0.66 | 0.988117 |
Target: 5'- --------cCGUUGcCGCCGCCGUCGg -3' miRNA: 3'- ccuacagaaGCGACuGUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 123501 | 0.66 | 0.988117 |
Target: 5'- gGGGUGUCgUCGUcGcCGCUGCCGcCc -3' miRNA: 3'- -CCUACAGaAGCGaCuGUGGCGGCaGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 78656 | 0.66 | 0.990822 |
Target: 5'- cGAUGUCgucgggcuucucggCGCagggGAaGCCGCCGUCu -3' miRNA: 3'- cCUACAGaa------------GCGa---CUgUGGCGGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 165176 | 0.66 | 0.989473 |
Target: 5'- uGGUGggaCUgcgcCGCUGuuGCCGUCGUCa -3' miRNA: 3'- cCUACa--GAa---GCGACugUGGCGGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 46071 | 0.66 | 0.988117 |
Target: 5'- gGGAUGaggUCGC-GACGcCCGgCGUCGc -3' miRNA: 3'- -CCUACagaAGCGaCUGU-GGCgGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 193331 | 0.66 | 0.989473 |
Target: 5'- gGGGUGgucgcCUUCGUucccaUGuCGCCGCuCGUCu -3' miRNA: 3'- -CCUACa----GAAGCG-----ACuGUGGCG-GCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 77444 | 0.66 | 0.990705 |
Target: 5'- aGGAUGcCgcCGUuggugcccgUGACACUGCCGcCGc -3' miRNA: 3'- -CCUACaGaaGCG---------ACUGUGGCGGCaGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 46501 | 0.66 | 0.990588 |
Target: 5'- cGGggGUCUUCuugggguGCUGGCACacgGgCGUCu -3' miRNA: 3'- -CCuaCAGAAG-------CGACUGUGg--CgGCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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