miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 5' -54.2 NC_003521.1 + 211616 1.11 0.006468
Target:  5'- gGGAUGUCUUCGCUGACACCGCCGUCGu -3'
miRNA:   3'- -CCUACAGAAGCGACUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 17459 0.76 0.634202
Target:  5'- cGAUGUCgcUGCUGACcaagGCCGCCGcCGa -3'
miRNA:   3'- cCUACAGaaGCGACUG----UGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 209817 0.75 0.703183
Target:  5'- ---cGUCcUCGCcGGCGCCGUCGUCGc -3'
miRNA:   3'- ccuaCAGaAGCGaCUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 39006 0.75 0.712877
Target:  5'- uGGAUGUgg-CGCUG-CACgGCCGUCa -3'
miRNA:   3'- -CCUACAgaaGCGACuGUGgCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 239234 0.75 0.712877
Target:  5'- uGGAUGUgg-CGCUG-CACgGCCGUCa -3'
miRNA:   3'- -CCUACAgaaGCGACuGUGgCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 29237 0.74 0.732062
Target:  5'- aGGAcGUCUcCGggGACACCGCCG-CGa -3'
miRNA:   3'- -CCUaCAGAaGCgaCUGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 53440 0.73 0.769389
Target:  5'- cGGAggcUGUUgcCGCUGcuCACCGUCGUCGg -3'
miRNA:   3'- -CCU---ACAGaaGCGACu-GUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 132479 0.73 0.80488
Target:  5'- ---cGUCUUCGgaGA--CCGCCGUCGg -3'
miRNA:   3'- ccuaCAGAAGCgaCUguGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 78567 0.73 0.813404
Target:  5'- cGGUGUCgcaccccCGUUGACGCCcaccccgccagcGCCGUCGg -3'
miRNA:   3'- cCUACAGaa-----GCGACUGUGG------------CGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 165794 0.72 0.838021
Target:  5'- --------cCGCUGGCGCUGCCGUCGc -3'
miRNA:   3'- ccuacagaaGCGACUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 23594 0.72 0.845106
Target:  5'- gGGGUGcuggccugcauccUCUUCGCgaucuGCACCGCCGUgGc -3'
miRNA:   3'- -CCUAC-------------AGAAGCGac---UGUGGCGGCAgC- -5'
14589 5' -54.2 NC_003521.1 + 151492 0.72 0.853565
Target:  5'- uGGGUG-CgacaUCGCgGACggugaacuACCGCCGUCGg -3'
miRNA:   3'- -CCUACaGa---AGCGaCUG--------UGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 44123 0.71 0.861057
Target:  5'- uGAaGUCggccgUCGCUgcuccuccuccGACGCCGUCGUCGa -3'
miRNA:   3'- cCUaCAGa----AGCGA-----------CUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 166121 0.71 0.868355
Target:  5'- gGGAgccgCUgcCGC-GGCGCCGCCGUCGc -3'
miRNA:   3'- -CCUaca-GAa-GCGaCUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 139782 0.71 0.885047
Target:  5'- cGGAUGgguuuggcgucgcccUCggCGgUGGCgaaGCCGCCGUCGa -3'
miRNA:   3'- -CCUAC---------------AGaaGCgACUG---UGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 24179 0.71 0.889033
Target:  5'- cGGA-GUCUUCGCUuuC-CCGgCGUCGg -3'
miRNA:   3'- -CCUaCAGAAGCGAcuGuGGCgGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 179975 0.7 0.9078
Target:  5'- uGGggGUCUUUGUUcAUgcucucgcggGCCGCCGUCGu -3'
miRNA:   3'- -CCuaCAGAAGCGAcUG----------UGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 163251 0.7 0.913617
Target:  5'- cGGcgGUCUUcaaCGCcuUGACGCCGgucUCGUCGg -3'
miRNA:   3'- -CCuaCAGAA---GCG--ACUGUGGC---GGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 87861 0.7 0.913617
Target:  5'- aGGUGUCcUCGCaGGCGCUggccagGCCGUUGg -3'
miRNA:   3'- cCUACAGaAGCGaCUGUGG------CGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 28964 0.7 0.913617
Target:  5'- aGGAUGUCUgucCGCgaucgugGuCGCUGCCGUaCGc -3'
miRNA:   3'- -CCUACAGAa--GCGa------CuGUGGCGGCA-GC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.