miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 5' -54.2 NC_003521.1 + 3625 0.67 0.980693
Target:  5'- aGGAUGUUgUUGUUcucuagcgugccacGGcCGCCGCCGUCu -3'
miRNA:   3'- -CCUACAGaAGCGA--------------CU-GUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 6013 0.66 0.98323
Target:  5'- ---cGUCUUCGUcauCGCUGUCGUCGu -3'
miRNA:   3'- ccuaCAGAAGCGacuGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 13861 0.66 0.988117
Target:  5'- cGGggGUCUcUGCgggcGGCGCCGCCa--- -3'
miRNA:   3'- -CCuaCAGAaGCGa---CUGUGGCGGcagc -5'
14589 5' -54.2 NC_003521.1 + 17459 0.76 0.634202
Target:  5'- cGAUGUCgcUGCUGACcaagGCCGCCGcCGa -3'
miRNA:   3'- cCUACAGaaGCGACUG----UGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 23594 0.72 0.845106
Target:  5'- gGGGUGcuggccugcauccUCUUCGCgaucuGCACCGCCGUgGc -3'
miRNA:   3'- -CCUAC-------------AGAAGCGac---UGUGGCGGCAgC- -5'
14589 5' -54.2 NC_003521.1 + 24179 0.71 0.889033
Target:  5'- cGGA-GUCUUCGCUuuC-CCGgCGUCGg -3'
miRNA:   3'- -CCUaCAGAAGCGAcuGuGGCgGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 26883 0.66 0.988117
Target:  5'- uGAUGg---CGCggagcagGugACCGCCGUCc -3'
miRNA:   3'- cCUACagaaGCGa------CugUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 27238 0.68 0.962923
Target:  5'- ---gGUCaUCGCcggcugcuacgUGGCGCUGCUGUCGg -3'
miRNA:   3'- ccuaCAGaAGCG-----------ACUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 28964 0.7 0.913617
Target:  5'- aGGAUGUCUgucCGCgaucgugGuCGCUGCCGUaCGc -3'
miRNA:   3'- -CCUACAGAa--GCGa------CuGUGGCGGCA-GC- -5'
14589 5' -54.2 NC_003521.1 + 29237 0.74 0.732062
Target:  5'- aGGAcGUCUcCGggGACACCGCCG-CGa -3'
miRNA:   3'- -CCUaCAGAaGCgaCUGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 35513 0.67 0.979214
Target:  5'- aGGGUGUCgaggugUCGaaaCUGGucCGCCauGCCGUCGu -3'
miRNA:   3'- -CCUACAGa-----AGC---GACU--GUGG--CGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 39005 0.66 0.98663
Target:  5'- aGGUGUCgaggccggaGCgGGCGCCGCCGa-- -3'
miRNA:   3'- cCUACAGaag------CGaCUGUGGCGGCagc -5'
14589 5' -54.2 NC_003521.1 + 39006 0.75 0.712877
Target:  5'- uGGAUGUgg-CGCUG-CACgGCCGUCa -3'
miRNA:   3'- -CCUACAgaaGCGACuGUGgCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 40386 0.69 0.929725
Target:  5'- cGAUGUCggCGUcgUGGCGCaccuCGCUGUCGa -3'
miRNA:   3'- cCUACAGaaGCG--ACUGUG----GCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 44123 0.71 0.861057
Target:  5'- uGAaGUCggccgUCGCUgcuccuccuccGACGCCGUCGUCGa -3'
miRNA:   3'- cCUaCAGa----AGCGA-----------CUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 44306 0.67 0.976957
Target:  5'- gGGcgGg--UUGCUGugGCCGCUG-CGg -3'
miRNA:   3'- -CCuaCagaAGCGACugUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 44494 0.66 0.98663
Target:  5'- uGGAaaUCga-GCUGcaGCCGCCGUCGu -3'
miRNA:   3'- -CCUacAGaagCGACugUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 46071 0.66 0.988117
Target:  5'- gGGAUGaggUCGC-GACGcCCGgCGUCGc -3'
miRNA:   3'- -CCUACagaAGCGaCUGU-GGCgGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 46501 0.66 0.990588
Target:  5'- cGGggGUCUUCuugggguGCUGGCACacgGgCGUCu -3'
miRNA:   3'- -CCuaCAGAAG-------CGACUGUGg--CgGCAGc -5'
14589 5' -54.2 NC_003521.1 + 46808 0.66 0.985003
Target:  5'- ---gGUCUgga-UGACGCCGCCGcCGg -3'
miRNA:   3'- ccuaCAGAagcgACUGUGGCGGCaGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.