Results 1 - 20 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14589 | 5' | -54.2 | NC_003521.1 | + | 3625 | 0.67 | 0.980693 |
Target: 5'- aGGAUGUUgUUGUUcucuagcgugccacGGcCGCCGCCGUCu -3' miRNA: 3'- -CCUACAGaAGCGA--------------CU-GUGGCGGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 6013 | 0.66 | 0.98323 |
Target: 5'- ---cGUCUUCGUcauCGCUGUCGUCGu -3' miRNA: 3'- ccuaCAGAAGCGacuGUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 13861 | 0.66 | 0.988117 |
Target: 5'- cGGggGUCUcUGCgggcGGCGCCGCCa--- -3' miRNA: 3'- -CCuaCAGAaGCGa---CUGUGGCGGcagc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 17459 | 0.76 | 0.634202 |
Target: 5'- cGAUGUCgcUGCUGACcaagGCCGCCGcCGa -3' miRNA: 3'- cCUACAGaaGCGACUG----UGGCGGCaGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 23594 | 0.72 | 0.845106 |
Target: 5'- gGGGUGcuggccugcauccUCUUCGCgaucuGCACCGCCGUgGc -3' miRNA: 3'- -CCUAC-------------AGAAGCGac---UGUGGCGGCAgC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 24179 | 0.71 | 0.889033 |
Target: 5'- cGGA-GUCUUCGCUuuC-CCGgCGUCGg -3' miRNA: 3'- -CCUaCAGAAGCGAcuGuGGCgGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 26883 | 0.66 | 0.988117 |
Target: 5'- uGAUGg---CGCggagcagGugACCGCCGUCc -3' miRNA: 3'- cCUACagaaGCGa------CugUGGCGGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 27238 | 0.68 | 0.962923 |
Target: 5'- ---gGUCaUCGCcggcugcuacgUGGCGCUGCUGUCGg -3' miRNA: 3'- ccuaCAGaAGCG-----------ACUGUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 28964 | 0.7 | 0.913617 |
Target: 5'- aGGAUGUCUgucCGCgaucgugGuCGCUGCCGUaCGc -3' miRNA: 3'- -CCUACAGAa--GCGa------CuGUGGCGGCA-GC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 29237 | 0.74 | 0.732062 |
Target: 5'- aGGAcGUCUcCGggGACACCGCCG-CGa -3' miRNA: 3'- -CCUaCAGAaGCgaCUGUGGCGGCaGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 35513 | 0.67 | 0.979214 |
Target: 5'- aGGGUGUCgaggugUCGaaaCUGGucCGCCauGCCGUCGu -3' miRNA: 3'- -CCUACAGa-----AGC---GACU--GUGG--CGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 39005 | 0.66 | 0.98663 |
Target: 5'- aGGUGUCgaggccggaGCgGGCGCCGCCGa-- -3' miRNA: 3'- cCUACAGaag------CGaCUGUGGCGGCagc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 39006 | 0.75 | 0.712877 |
Target: 5'- uGGAUGUgg-CGCUG-CACgGCCGUCa -3' miRNA: 3'- -CCUACAgaaGCGACuGUGgCGGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 40386 | 0.69 | 0.929725 |
Target: 5'- cGAUGUCggCGUcgUGGCGCaccuCGCUGUCGa -3' miRNA: 3'- cCUACAGaaGCG--ACUGUG----GCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 44123 | 0.71 | 0.861057 |
Target: 5'- uGAaGUCggccgUCGCUgcuccuccuccGACGCCGUCGUCGa -3' miRNA: 3'- cCUaCAGa----AGCGA-----------CUGUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 44306 | 0.67 | 0.976957 |
Target: 5'- gGGcgGg--UUGCUGugGCCGCUG-CGg -3' miRNA: 3'- -CCuaCagaAGCGACugUGGCGGCaGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 44494 | 0.66 | 0.98663 |
Target: 5'- uGGAaaUCga-GCUGcaGCCGCCGUCGu -3' miRNA: 3'- -CCUacAGaagCGACugUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 46071 | 0.66 | 0.988117 |
Target: 5'- gGGAUGaggUCGC-GACGcCCGgCGUCGc -3' miRNA: 3'- -CCUACagaAGCGaCUGU-GGCgGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 46501 | 0.66 | 0.990588 |
Target: 5'- cGGggGUCUUCuugggguGCUGGCACacgGgCGUCu -3' miRNA: 3'- -CCuaCAGAAG-------CGACUGUGg--CgGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 46808 | 0.66 | 0.985003 |
Target: 5'- ---gGUCUgga-UGACGCCGCCGcCGg -3' miRNA: 3'- ccuaCAGAagcgACUGUGGCGGCaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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