miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1459 3' -60 NC_001335.1 + 31098 0.66 0.465516
Target:  5'- gAGGUcaagGACAUCCGCCaGGcguaccuGGGcGGUa -3'
miRNA:   3'- -UCCGaa--CUGUAGGUGGcCCu------CCC-CCG- -5'
1459 3' -60 NC_001335.1 + 46489 0.68 0.340692
Target:  5'- aAGGCcgUGGaAUCgGCCGGcGGGGGaGCg -3'
miRNA:   3'- -UCCGa-ACUgUAGgUGGCCcUCCCC-CG- -5'
1459 3' -60 NC_001335.1 + 5022 0.68 0.340692
Target:  5'- cGGUcgGACAUCUugACCGGGccaccGGGGuGGUc -3'
miRNA:   3'- uCCGaaCUGUAGG--UGGCCC-----UCCC-CCG- -5'
1459 3' -60 NC_001335.1 + 14852 0.68 0.328059
Target:  5'- aGGGCUgaucccaacuUGACAgCCACCcggcugucuaccccGGAGGGGGa -3'
miRNA:   3'- -UCCGA----------ACUGUaGGUGGc-------------CCUCCCCCg -5'
1459 3' -60 NC_001335.1 + 6933 0.68 0.324955
Target:  5'- aGGGC--GugAUCCGCCGGcucaaGGGcuGGGGCa -3'
miRNA:   3'- -UCCGaaCugUAGGUGGCC-----CUC--CCCCG- -5'
1459 3' -60 NC_001335.1 + 18280 0.69 0.280334
Target:  5'- uGGCcgcugacUUGACAUCCACCaGGAGGuaaGCa -3'
miRNA:   3'- uCCG-------AACUGUAGGUGGcCCUCCcc-CG- -5'
1459 3' -60 NC_001335.1 + 22321 0.7 0.248127
Target:  5'- cAGGCgcugGGCAUCaC-CCcGGAGGGGGa -3'
miRNA:   3'- -UCCGaa--CUGUAG-GuGGcCCUCCCCCg -5'
1459 3' -60 NC_001335.1 + 27086 0.71 0.235887
Target:  5'- uGGCcaccgGGCAUCuggaugaaCACCGGGAcgcuGGGGGUg -3'
miRNA:   3'- uCCGaa---CUGUAG--------GUGGCCCU----CCCCCG- -5'
1459 3' -60 NC_001335.1 + 38812 0.72 0.19699
Target:  5'- --aCUUGACAUCCACCaGGAGGaaacauGGCa -3'
miRNA:   3'- uccGAACUGUAGGUGGcCCUCCc-----CCG- -5'
1459 3' -60 NC_001335.1 + 51113 0.75 0.109118
Target:  5'- cAGGCUUGACAUCCACCaaa--GGGGUg -3'
miRNA:   3'- -UCCGAACUGUAGGUGGcccucCCCCG- -5'
1459 3' -60 NC_001335.1 + 12322 1.1 0.000247
Target:  5'- cAGGCUUGACAUCCACCGGGAGGGGGCu -3'
miRNA:   3'- -UCCGAACUGUAGGUGGCCCUCCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.