miRNA display CGI


Results 21 - 40 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14590 3' -58.9 NC_003521.1 + 153929 0.66 0.909631
Target:  5'- uUCCAcuccUCgGCCACCCGCc---GCGCCGUc -3'
miRNA:   3'- -GGGU----AG-UGGUGGGCGaccaCGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 37086 0.66 0.909631
Target:  5'- aCCAUCuCCACCuCGUac-UGCcACCGCg -3'
miRNA:   3'- gGGUAGuGGUGG-GCGaccACG-UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 195614 0.66 0.909631
Target:  5'- gCCggC-CCGCCaGCUGGUcGCGuuGCu -3'
miRNA:   3'- gGGuaGuGGUGGgCGACCA-CGUggCG- -5'
14590 3' -58.9 NC_003521.1 + 89872 0.66 0.909059
Target:  5'- gCCCAUacgaCGCCACCUGgC-GGUGUGugaaaacCCGCa -3'
miRNA:   3'- -GGGUA----GUGGUGGGC-GaCCACGU-------GGCG- -5'
14590 3' -58.9 NC_003521.1 + 60844 0.66 0.906167
Target:  5'- aCCAggACUuCCCGCagguguucgcgcagcUGGUGUgguGCCGCa -3'
miRNA:   3'- gGGUagUGGuGGGCG---------------ACCACG---UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 123488 0.66 0.906167
Target:  5'- gUCCGUCGCCGgcggggugucgucguCgCCGCUGccGC-CCGCa -3'
miRNA:   3'- -GGGUAGUGGU---------------G-GGCGACcaCGuGGCG- -5'
14590 3' -58.9 NC_003521.1 + 36617 0.66 0.903817
Target:  5'- aCUcgCACgACuuG-UGGUGCGCCuGCa -3'
miRNA:   3'- gGGuaGUGgUGggCgACCACGUGG-CG- -5'
14590 3' -58.9 NC_003521.1 + 104138 0.66 0.903817
Target:  5'- gCUCGggcCCGCCCuGCUcGGUGCuCUGCg -3'
miRNA:   3'- -GGGUaguGGUGGG-CGA-CCACGuGGCG- -5'
14590 3' -58.9 NC_003521.1 + 61984 0.66 0.903817
Target:  5'- uCCCGUCGCC-CCCGC------GCCGCc -3'
miRNA:   3'- -GGGUAGUGGuGGGCGaccacgUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 190080 0.66 0.903817
Target:  5'- -aCGUUcUgGCCCGCUGcUGCGCCGa -3'
miRNA:   3'- ggGUAGuGgUGGGCGACcACGUGGCg -5'
14590 3' -58.9 NC_003521.1 + 16258 0.66 0.903817
Target:  5'- gCCugcggCugCGCugCCGCUGGUuccugcuggGCGCCGUg -3'
miRNA:   3'- gGGua---GugGUG--GGCGACCA---------CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 113241 0.66 0.903817
Target:  5'- gCgCAcaGCUACUCGCUGGUGaCGCUGa -3'
miRNA:   3'- -GgGUagUGGUGGGCGACCAC-GUGGCg -5'
14590 3' -58.9 NC_003521.1 + 92983 0.66 0.903817
Target:  5'- gCCUG-CACC-CCCgGCUGcacgGCACCGUg -3'
miRNA:   3'- -GGGUaGUGGuGGG-CGACca--CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 138842 0.66 0.903817
Target:  5'- aCgCAgcugCACCGCCUGCUGGaccccaucucGCACCcCg -3'
miRNA:   3'- -GgGUa---GUGGUGGGCGACCa---------CGUGGcG- -5'
14590 3' -58.9 NC_003521.1 + 155423 0.66 0.902032
Target:  5'- aCCAggagcugugcgagcUgGCCgACCCGCUGG-GCGagUCGCa -3'
miRNA:   3'- gGGU--------------AgUGG-UGGGCGACCaCGU--GGCG- -5'
14590 3' -58.9 NC_003521.1 + 163596 0.66 0.897794
Target:  5'- cCCUGUCGuCC-CCCGUaGGcUGCucuCCGCu -3'
miRNA:   3'- -GGGUAGU-GGuGGGCGaCC-ACGu--GGCG- -5'
14590 3' -58.9 NC_003521.1 + 72379 0.66 0.897794
Target:  5'- cCCCAUCACgcucuucaCGCCCGC-----CGCCGCg -3'
miRNA:   3'- -GGGUAGUG--------GUGGGCGaccacGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 42961 0.66 0.897794
Target:  5'- gCCCAgcgagCGCgACCCGCcGGcGCccACCGa -3'
miRNA:   3'- -GGGUa----GUGgUGGGCGaCCaCG--UGGCg -5'
14590 3' -58.9 NC_003521.1 + 225768 0.66 0.897794
Target:  5'- -gCAcgCGCCGCUCGCgcucGCGCCGCu -3'
miRNA:   3'- ggGUa-GUGGUGGGCGaccaCGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 103585 0.66 0.897794
Target:  5'- gCCGUCgGCC-CCgGCcGGUGCGCgGg -3'
miRNA:   3'- gGGUAG-UGGuGGgCGaCCACGUGgCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.