miRNA display CGI


Results 21 - 40 of 543 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14590 5' -54.6 NC_003521.1 + 116858 0.66 0.982594
Target:  5'- cGAccGCGACGAccugcgcgcgcaguGGcgcGGCUGCGGCGGCg -3'
miRNA:   3'- cCUacCGCUGCU--------------UC---UCGGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 145036 0.66 0.982594
Target:  5'- uGGAUcGCGugGccGAGCgGCacgaugaccgucugGGCGGCu -3'
miRNA:   3'- -CCUAcCGCugCuuCUCGgUG--------------UCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 110987 0.66 0.981211
Target:  5'- ---gGGC-ACGGccacGGGCCcCAGCAGCa -3'
miRNA:   3'- ccuaCCGcUGCUu---CUCGGuGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 110524 0.66 0.981211
Target:  5'- uGGAUGcGCGGCGccGcGGCCucgcccaGGUAGCc -3'
miRNA:   3'- -CCUAC-CGCUGCuuC-UCGGug-----UCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 106880 0.66 0.981211
Target:  5'- ---cGGUGACGGuAGuAGCgGC-GCAGCg -3'
miRNA:   3'- ccuaCCGCUGCU-UC-UCGgUGuCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 190978 0.66 0.981211
Target:  5'- --cUGGaCGAgGccGAGCgGCAGCAGg -3'
miRNA:   3'- ccuACC-GCUgCuuCUCGgUGUCGUCg -5'
14590 5' -54.6 NC_003521.1 + 126627 0.66 0.981211
Target:  5'- ---cGGCGAUGGAcggucGGGUgACGcGCAGCa -3'
miRNA:   3'- ccuaCCGCUGCUU-----CUCGgUGU-CGUCG- -5'
14590 5' -54.6 NC_003521.1 + 87735 0.66 0.981211
Target:  5'- ---cGGCGGCGugguGGGCCcCGGCccgGGCc -3'
miRNA:   3'- ccuaCCGCUGCuu--CUCGGuGUCG---UCG- -5'
14590 5' -54.6 NC_003521.1 + 142806 0.66 0.981211
Target:  5'- cGGUGGUGGC-AAcAGCCugGGCuucGGCa -3'
miRNA:   3'- cCUACCGCUGcUUcUCGGugUCG---UCG- -5'
14590 5' -54.6 NC_003521.1 + 129376 0.66 0.981211
Target:  5'- ---aGGCGACGGuAGAuGUC-CAGguGCu -3'
miRNA:   3'- ccuaCCGCUGCU-UCU-CGGuGUCguCG- -5'
14590 5' -54.6 NC_003521.1 + 226127 0.66 0.981211
Target:  5'- aGGuUGGCG-CGGAu-GCCccaccaccaGCGGCGGCa -3'
miRNA:   3'- -CCuACCGCuGCUUcuCGG---------UGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 106433 0.66 0.981211
Target:  5'- -cGUGucGCuGGCGAAGcGCaCGCAGUAGCg -3'
miRNA:   3'- ccUAC--CG-CUGCUUCuCG-GUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 132635 0.66 0.981211
Target:  5'- ---cGGCGGCGGc--GCCAcCGGCGGUu -3'
miRNA:   3'- ccuaCCGCUGCUucuCGGU-GUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 117306 0.66 0.981211
Target:  5'- ----aGCGACGcggauugcGGGCgGCAGCGGCg -3'
miRNA:   3'- ccuacCGCUGCuu------CUCGgUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 161261 0.66 0.981211
Target:  5'- aGGAUcagagcaGCGACGgcG-GCaacaguaGCAGCAGCg -3'
miRNA:   3'- -CCUAc------CGCUGCuuCuCGg------UGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 84654 0.66 0.981211
Target:  5'- ---cGGCGA-GAugccgcacAGGcGUCGCAGCAGCg -3'
miRNA:   3'- ccuaCCGCUgCU--------UCU-CGGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 167528 0.66 0.981211
Target:  5'- cGGUGGUGACGAcAGAcgGCgAUAG-AGCg -3'
miRNA:   3'- cCUACCGCUGCU-UCU--CGgUGUCgUCG- -5'
14590 5' -54.6 NC_003521.1 + 13645 0.66 0.981211
Target:  5'- gGGAagGGCGGCGGAG-GCgGgAGaagaGGCu -3'
miRNA:   3'- -CCUa-CCGCUGCUUCuCGgUgUCg---UCG- -5'
14590 5' -54.6 NC_003521.1 + 18784 0.66 0.981211
Target:  5'- ---aGGCGGUGGAGGGCCAgcGCuGCu -3'
miRNA:   3'- ccuaCCGCUGCUUCUCGGUguCGuCG- -5'
14590 5' -54.6 NC_003521.1 + 125314 0.66 0.981007
Target:  5'- cGGAc-GCGGCGGuggguccggccacAGAGCgACAcGCGGCc -3'
miRNA:   3'- -CCUacCGCUGCU-------------UCUCGgUGU-CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.