miRNA display CGI


Results 21 - 40 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14591 3' -59.5 NC_003521.1 + 87780 0.66 0.872879
Target:  5'- gCCAg-GGCCAGGUgcugAGGCCCGUaGCg -3'
miRNA:   3'- -GGUagUUGGUCCGg---UCCGGGCAcCGg -5'
14591 3' -59.5 NC_003521.1 + 218215 0.66 0.872878
Target:  5'- cCCGggCAACgGaGGUCAGGCgaCCGcaggGGCCg -3'
miRNA:   3'- -GGUa-GUUGgU-CCGGUCCG--GGCa---CCGG- -5'
14591 3' -59.5 NC_003521.1 + 87792 0.66 0.872878
Target:  5'- cUCGUCGGucUCGGGC--GGCCUG-GGCCa -3'
miRNA:   3'- -GGUAGUU--GGUCCGguCCGGGCaCCGG- -5'
14591 3' -59.5 NC_003521.1 + 176737 0.66 0.872878
Target:  5'- gCCcgCcuCCAGGCCGGGCUCGcacagacCCa -3'
miRNA:   3'- -GGuaGuuGGUCCGGUCCGGGCacc----GG- -5'
14591 3' -59.5 NC_003521.1 + 85475 0.66 0.872189
Target:  5'- gUCGUCGugguGCCGGugcccgcgcccccGCCGGGaCCCGcGGUCg -3'
miRNA:   3'- -GGUAGU----UGGUC-------------CGGUCC-GGGCaCCGG- -5'
14591 3' -59.5 NC_003521.1 + 216331 0.66 0.865897
Target:  5'- cCCGacccCGAUCucucgguGGCCaccgagggugugAGGCCCGUGGUCc -3'
miRNA:   3'- -GGUa---GUUGGu------CCGG------------UCCGGGCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 68062 0.66 0.865897
Target:  5'- cCCGguggCAGCCAGaauGCCGGGCCCc--GCa -3'
miRNA:   3'- -GGUa---GUUGGUC---CGGUCCGGGcacCGg -5'
14591 3' -59.5 NC_003521.1 + 75239 0.66 0.865897
Target:  5'- aCCGUCAcUUAGGCU-GGCagacgcugaGUGGCCg -3'
miRNA:   3'- -GGUAGUuGGUCCGGuCCGgg-------CACCGG- -5'
14591 3' -59.5 NC_003521.1 + 70885 0.66 0.865897
Target:  5'- aCCuaccCAACCAcGUCAGGuaaaCCCGUcGGCCc -3'
miRNA:   3'- -GGua--GUUGGUcCGGUCC----GGGCA-CCGG- -5'
14591 3' -59.5 NC_003521.1 + 153432 0.66 0.865897
Target:  5'- gUCAgcagCAGCCggucgcgcucguAGGCCAgcGGCUCGcaGGCCa -3'
miRNA:   3'- -GGUa---GUUGG------------UCCGGU--CCGGGCa-CCGG- -5'
14591 3' -59.5 NC_003521.1 + 105798 0.66 0.865897
Target:  5'- aCCGU-GACgCAGGCCacGGuGCCCGgcaGCCa -3'
miRNA:   3'- -GGUAgUUG-GUCCGG--UC-CGGGCac-CGG- -5'
14591 3' -59.5 NC_003521.1 + 71270 0.66 0.865897
Target:  5'- aCAUCGGCgGaGGCgGGGgCCGcGGCa -3'
miRNA:   3'- gGUAGUUGgU-CCGgUCCgGGCaCCGg -5'
14591 3' -59.5 NC_003521.1 + 17130 0.66 0.865897
Target:  5'- gUCGUCGAUCcuGCCGGcgcgcuucGCCCGacccucccUGGCCa -3'
miRNA:   3'- -GGUAGUUGGucCGGUC--------CGGGC--------ACCGG- -5'
14591 3' -59.5 NC_003521.1 + 140611 0.66 0.865897
Target:  5'- uCCGcuUCGAggAGGCCguaaauauGGcGCUCGUGGCCu -3'
miRNA:   3'- -GGU--AGUUggUCCGG--------UC-CGGGCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 114914 0.66 0.865897
Target:  5'- ---aCAACCcgcgcGGCCGGGCCuCGUGcauGCUg -3'
miRNA:   3'- gguaGUUGGu----CCGGUCCGG-GCAC---CGG- -5'
14591 3' -59.5 NC_003521.1 + 93027 0.66 0.865188
Target:  5'- aUCGUCAACCuggugcagguGGcGCUGGGCUUcaacaccguggugGUGGCCa -3'
miRNA:   3'- -GGUAGUUGG----------UC-CGGUCCGGG-------------CACCGG- -5'
14591 3' -59.5 NC_003521.1 + 7407 0.66 0.858728
Target:  5'- gCCGUCGgaGCCaccgGGGCCAGGagCCGagacGGCa -3'
miRNA:   3'- -GGUAGU--UGG----UCCGGUCCg-GGCa---CCGg -5'
14591 3' -59.5 NC_003521.1 + 172789 0.66 0.858728
Target:  5'- gCCGcgGACCAcGCC--GCCCGUGGCg -3'
miRNA:   3'- -GGUagUUGGUcCGGucCGGGCACCGg -5'
14591 3' -59.5 NC_003521.1 + 63035 0.66 0.858728
Target:  5'- cCCAcCAGCggaCAGGCCccgucGGCCC-UGGCg -3'
miRNA:   3'- -GGUaGUUG---GUCCGGu----CCGGGcACCGg -5'
14591 3' -59.5 NC_003521.1 + 216872 0.66 0.858728
Target:  5'- cCCGUgGAgCGGGacauCCAGGCCauccaGGCCa -3'
miRNA:   3'- -GGUAgUUgGUCC----GGUCCGGgca--CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.