Results 21 - 40 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14591 | 5' | -58.9 | NC_003521.1 | + | 105895 | 0.66 | 0.86693 |
Target: 5'- --uGCCGGgGGcGugUACGUAGGCCg- -3' miRNA: 3'- uacCGGCUgCU-CugGUGCAUCCGGac -5' |
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14591 | 5' | -58.9 | NC_003521.1 | + | 214461 | 0.66 | 0.866214 |
Target: 5'- -cGG-CGGCGcugaaggagaggaAGGCCACGUagAGGCCUa -3' miRNA: 3'- uaCCgGCUGC-------------UCUGGUGCA--UCCGGAc -5' |
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14591 | 5' | -58.9 | NC_003521.1 | + | 54290 | 0.66 | 0.859677 |
Target: 5'- -aGGCCGuuGCGGcuGGCCACGUAGaGCa-- -3' miRNA: 3'- uaCCGGC--UGCU--CUGGUGCAUC-CGgac -5' |
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14591 | 5' | -58.9 | NC_003521.1 | + | 53352 | 0.66 | 0.859677 |
Target: 5'- --cGCCGGCGcGGCgGCGgagGGGCCg- -3' miRNA: 3'- uacCGGCUGCuCUGgUGCa--UCCGGac -5' |
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14591 | 5' | -58.9 | NC_003521.1 | + | 130942 | 0.66 | 0.859677 |
Target: 5'- -cGcGCCGugGAGAUggCACGcaAGGCCUu -3' miRNA: 3'- uaC-CGGCugCUCUG--GUGCa-UCCGGAc -5' |
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14591 | 5' | -58.9 | NC_003521.1 | + | 173255 | 0.66 | 0.859677 |
Target: 5'- cUGGCCcGCGGGGCC-CGcc-GCCUGa -3' miRNA: 3'- uACCGGcUGCUCUGGuGCaucCGGAC- -5' |
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14591 | 5' | -58.9 | NC_003521.1 | + | 188343 | 0.66 | 0.859677 |
Target: 5'- --aGCCGA--AGACCACGaGGGCCg- -3' miRNA: 3'- uacCGGCUgcUCUGGUGCaUCCGGac -5' |
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14591 | 5' | -58.9 | NC_003521.1 | + | 206574 | 0.66 | 0.859677 |
Target: 5'- -aGGgCGACGGGGCCGac-AGGCCc- -3' miRNA: 3'- uaCCgGCUGCUCUGGUgcaUCCGGac -5' |
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14591 | 5' | -58.9 | NC_003521.1 | + | 45746 | 0.66 | 0.859677 |
Target: 5'- -aGGCCGgguuuuguagcGCGAGACCGCGUcAGGa--- -3' miRNA: 3'- uaCCGGC-----------UGCUCUGGUGCA-UCCggac -5' |
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14591 | 5' | -58.9 | NC_003521.1 | + | 36606 | 0.66 | 0.858941 |
Target: 5'- gGUGGCCGACGAcucgcacGACU-UGUGGugcGCCUGc -3' miRNA: 3'- -UACCGGCUGCU-------CUGGuGCAUC---CGGAC- -5' |
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14591 | 5' | -58.9 | NC_003521.1 | + | 117469 | 0.66 | 0.858203 |
Target: 5'- -cGGCUGuCgGAGGCCACGgccgcggcgcugGGGCCg- -3' miRNA: 3'- uaCCGGCuG-CUCUGGUGCa-----------UCCGGac -5' |
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14591 | 5' | -58.9 | NC_003521.1 | + | 111800 | 0.66 | 0.852235 |
Target: 5'- -cGGCCGAC---GCCAUGgagcgcGGCCUGa -3' miRNA: 3'- uaCCGGCUGcucUGGUGCau----CCGGAC- -5' |
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14591 | 5' | -58.9 | NC_003521.1 | + | 153715 | 0.66 | 0.852235 |
Target: 5'- -aGGUgGugGGcGCCACGcAGGCCUu -3' miRNA: 3'- uaCCGgCugCUcUGGUGCaUCCGGAc -5' |
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14591 | 5' | -58.9 | NC_003521.1 | + | 215463 | 0.66 | 0.852235 |
Target: 5'- -aGGCCGAgGGaGCCACGaAGGCg-- -3' miRNA: 3'- uaCCGGCUgCUcUGGUGCaUCCGgac -5' |
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14591 | 5' | -58.9 | NC_003521.1 | + | 138218 | 0.67 | 0.844609 |
Target: 5'- cUGGCUGcACGAcGACgACGU-GGCCa- -3' miRNA: 3'- uACCGGC-UGCU-CUGgUGCAuCCGGac -5' |
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14591 | 5' | -58.9 | NC_003521.1 | + | 154668 | 0.67 | 0.844609 |
Target: 5'- -aGGCCGgcaGCGAGACgCugG-AGGCUa- -3' miRNA: 3'- uaCCGGC---UGCUCUG-GugCaUCCGGac -5' |
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14591 | 5' | -58.9 | NC_003521.1 | + | 176931 | 0.67 | 0.844609 |
Target: 5'- -gGGUCGugGGGcggucaGCCAaGUGGGCCa- -3' miRNA: 3'- uaCCGGCugCUC------UGGUgCAUCCGGac -5' |
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14591 | 5' | -58.9 | NC_003521.1 | + | 5826 | 0.67 | 0.842287 |
Target: 5'- -aGGCCaGGgggaccgcuaccgcUGGGACCgcACGUAGGCCUc -3' miRNA: 3'- uaCCGG-CU--------------GCUCUGG--UGCAUCCGGAc -5' |
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14591 | 5' | -58.9 | NC_003521.1 | + | 181761 | 0.67 | 0.839949 |
Target: 5'- -cGGCCGACGAggacaacgagcuggaGACgGCGcucaAGGCCa- -3' miRNA: 3'- uaCCGGCUGCU---------------CUGgUGCa---UCCGGac -5' |
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14591 | 5' | -58.9 | NC_003521.1 | + | 16419 | 0.67 | 0.836806 |
Target: 5'- cUGGCCGGCGAgGugUAcCGgcuGGCCg- -3' miRNA: 3'- uACCGGCUGCU-CugGU-GCau-CCGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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