miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14592 3' -59.5 NC_003521.1 + 975 0.66 0.817085
Target:  5'- cGAGAgGCcggcGGUCuGCuCCCGUGGGCc -3'
miRNA:   3'- -UUCUgCGa---CCAGuCGuGGGCGCUCGu -5'
14592 3' -59.5 NC_003521.1 + 177944 0.66 0.817085
Target:  5'- gGAGugGCcGGUCGGUACCgG-GAGgGa -3'
miRNA:   3'- -UUCugCGaCCAGUCGUGGgCgCUCgU- -5'
14592 3' -59.5 NC_003521.1 + 92164 0.66 0.817085
Target:  5'- uAGugGUUGG-CGGCcaucCCCGcCGAGCu -3'
miRNA:   3'- uUCugCGACCaGUCGu---GGGC-GCUCGu -5'
14592 3' -59.5 NC_003521.1 + 135431 0.66 0.808675
Target:  5'- -cGGCGCgauUUGGCGCCCGCGGGa- -3'
miRNA:   3'- uuCUGCGaccAGUCGUGGGCGCUCgu -5'
14592 3' -59.5 NC_003521.1 + 105440 0.66 0.808675
Target:  5'- -cGGCaC-GGuUUGGCGCCCGCGGGCGa -3'
miRNA:   3'- uuCUGcGaCC-AGUCGUGGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 15339 0.66 0.808675
Target:  5'- --cGCGCUGGUgCAGCAgUCGCGAc-- -3'
miRNA:   3'- uucUGCGACCA-GUCGUgGGCGCUcgu -5'
14592 3' -59.5 NC_003521.1 + 101633 0.66 0.808675
Target:  5'- -cGGCGCUGG-UAGCGCgUcacguucaGCGAGCGc -3'
miRNA:   3'- uuCUGCGACCaGUCGUGgG--------CGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 88062 0.66 0.808675
Target:  5'- uGAGGuCGCggUGGUCggcGGCGCCCGUGAcCAc -3'
miRNA:   3'- -UUCU-GCG--ACCAG---UCGUGGGCGCUcGU- -5'
14592 3' -59.5 NC_003521.1 + 135371 0.66 0.808675
Target:  5'- ---cCGCggcGGUUAuCGCCCGCGGGCGc -3'
miRNA:   3'- uucuGCGa--CCAGUcGUGGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 48424 0.66 0.808675
Target:  5'- cGAGGCGCUGGaaCAGCA-CCGUcAGCu -3'
miRNA:   3'- -UUCUGCGACCa-GUCGUgGGCGcUCGu -5'
14592 3' -59.5 NC_003521.1 + 165268 0.67 0.800116
Target:  5'- gAGGGCGCUGGcgUAGC-CgCCGCcGGCGc -3'
miRNA:   3'- -UUCUGCGACCa-GUCGuG-GGCGcUCGU- -5'
14592 3' -59.5 NC_003521.1 + 226330 0.67 0.800116
Target:  5'- cAAGAUGUgcaUGGUgCGcGCGcCCCGCGGGUAg -3'
miRNA:   3'- -UUCUGCG---ACCA-GU-CGU-GGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 166870 0.67 0.799253
Target:  5'- cGGGCGCaGGUC-GUACaucaaguCCGCGGGCGc -3'
miRNA:   3'- uUCUGCGaCCAGuCGUG-------GGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 54898 0.67 0.797521
Target:  5'- cAGugGCUgcgcaccguuugcaGGaUCAGCGCCggCGUGGGCAg -3'
miRNA:   3'- uUCugCGA--------------CC-AGUCGUGG--GCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 227647 0.67 0.791417
Target:  5'- cGGcACGcCUGGUCAGgACCCGCcuGUAc -3'
miRNA:   3'- uUC-UGC-GACCAGUCgUGGGCGcuCGU- -5'
14592 3' -59.5 NC_003521.1 + 128422 0.67 0.791417
Target:  5'- aAAGGCgGCcGGUCGGCGCaCUGCGccAGCc -3'
miRNA:   3'- -UUCUG-CGaCCAGUCGUG-GGCGC--UCGu -5'
14592 3' -59.5 NC_003521.1 + 238450 0.67 0.782583
Target:  5'- gGAGGCGCaGGgCGGCcUCgGCGGGCGg -3'
miRNA:   3'- -UUCUGCGaCCaGUCGuGGgCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 70708 0.67 0.782583
Target:  5'- ----aGCUGcGUCGGCGCCUGCGccggauguaccGGCAc -3'
miRNA:   3'- uucugCGAC-CAGUCGUGGGCGC-----------UCGU- -5'
14592 3' -59.5 NC_003521.1 + 197858 0.67 0.782583
Target:  5'- uGGGCGCcggcgGGUC-GCGCUCGCuGGGCu -3'
miRNA:   3'- uUCUGCGa----CCAGuCGUGGGCG-CUCGu -5'
14592 3' -59.5 NC_003521.1 + 38222 0.67 0.782583
Target:  5'- gGAGGCGCaGGgCGGCcUCgGCGGGCGg -3'
miRNA:   3'- -UUCUGCGaCCaGUCGuGGgCGCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.