miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14592 5' -58.4 NC_003521.1 + 197484 0.66 0.903817
Target:  5'- -aCGcGCGGCGGGCCg-GAcGGCG-CGg -3'
miRNA:   3'- ggGU-CGCUGCCCGGaaCUuCCGCaGC- -5'
14592 5' -58.4 NC_003521.1 + 136396 0.66 0.903817
Target:  5'- cCUCGGCcGCGGGCCgcgUGuGAGGCa--- -3'
miRNA:   3'- -GGGUCGcUGCCCGGa--AC-UUCCGcagc -5'
14592 5' -58.4 NC_003521.1 + 178380 0.66 0.903224
Target:  5'- cCCCGugcgcgcGCGGCGGGCUcagacgaggagaUUGggGuGCGUg- -3'
miRNA:   3'- -GGGU-------CGCUGCCCGG------------AACuuC-CGCAgc -5'
14592 5' -58.4 NC_003521.1 + 52332 0.66 0.902032
Target:  5'- uCUCGGCGGCGgacccaggcccacGGCCUgcucguagcucgGAGGcGCGUCa -3'
miRNA:   3'- -GGGUCGCUGC-------------CCGGAa-----------CUUC-CGCAGc -5'
14592 5' -58.4 NC_003521.1 + 67571 0.66 0.897794
Target:  5'- --aGGCGGCGGGCCccGcGGGCcagaGUCGc -3'
miRNA:   3'- gggUCGCUGCCCGGaaCuUCCG----CAGC- -5'
14592 5' -58.4 NC_003521.1 + 32419 0.66 0.897794
Target:  5'- gCCC-GUGGCGcacGGCCUccUGAcgguuacggauGGGCGUCa -3'
miRNA:   3'- -GGGuCGCUGC---CCGGA--ACU-----------UCCGCAGc -5'
14592 5' -58.4 NC_003521.1 + 212634 0.66 0.895327
Target:  5'- aCCUugGGCGACuuGGCCaugcgacccgaaGAGGGCGUCGc -3'
miRNA:   3'- -GGG--UCGCUGc-CCGGaa----------CUUCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 195349 0.67 0.891565
Target:  5'- gCCguGGUGGUGGGCCgggUGAAGGUGaCGc -3'
miRNA:   3'- gGG--UCGCUGCCCGGa--ACUUCCGCaGC- -5'
14592 5' -58.4 NC_003521.1 + 51767 0.67 0.891565
Target:  5'- gUCGGCGACuuuggaaGGCUUUGAAGGUGgagCa -3'
miRNA:   3'- gGGUCGCUGc------CCGGAACUUCCGCa--Gc -5'
14592 5' -58.4 NC_003521.1 + 121728 0.67 0.891565
Target:  5'- gCCCGGCGAgcuGCCguugGAAGGCGagGg -3'
miRNA:   3'- -GGGUCGCUgccCGGaa--CUUCCGCagC- -5'
14592 5' -58.4 NC_003521.1 + 137284 0.67 0.885132
Target:  5'- cCCCAGCGACcuGGaGCUgcgGguGGCG-CGg -3'
miRNA:   3'- -GGGUCGCUG--CC-CGGaa-CuuCCGCaGC- -5'
14592 5' -58.4 NC_003521.1 + 198447 0.67 0.885132
Target:  5'- gCCAcGCGAUuGGCCgucggcUGgcGGUGUCGa -3'
miRNA:   3'- gGGU-CGCUGcCCGGa-----ACuuCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 147771 0.67 0.885132
Target:  5'- gCCAGgGACGGGagcgggguucuuUUUUGAGGGUG-CGg -3'
miRNA:   3'- gGGUCgCUGCCC------------GGAACUUCCGCaGC- -5'
14592 5' -58.4 NC_003521.1 + 99677 0.67 0.885132
Target:  5'- gCCCGGUGcACGGGgUUgccGAAGGUcUCGg -3'
miRNA:   3'- -GGGUCGC-UGCCCgGAa--CUUCCGcAGC- -5'
14592 5' -58.4 NC_003521.1 + 226149 0.67 0.885132
Target:  5'- aCCAGCGGC-GGCaCUc---GGCGUCGu -3'
miRNA:   3'- gGGUCGCUGcCCG-GAacuuCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 229265 0.67 0.885132
Target:  5'- gUCCGGCgcacGACGGcGCC--GGAGGCGUa- -3'
miRNA:   3'- -GGGUCG----CUGCC-CGGaaCUUCCGCAgc -5'
14592 5' -58.4 NC_003521.1 + 109400 0.67 0.878501
Target:  5'- aCCCGGUu---GGUgUUGAAGGCGUUGa -3'
miRNA:   3'- -GGGUCGcugcCCGgAACUUCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 156895 0.67 0.878501
Target:  5'- gCCCgauggcacggggGGCGACGGGCCggagcGggGGaCuUCGc -3'
miRNA:   3'- -GGG------------UCGCUGCCCGGaa---CuuCC-GcAGC- -5'
14592 5' -58.4 NC_003521.1 + 121909 0.67 0.871673
Target:  5'- gCCCAcGCcGCGGcGCCgacGAGGGCGagGa -3'
miRNA:   3'- -GGGU-CGcUGCC-CGGaa-CUUCCGCagC- -5'
14592 5' -58.4 NC_003521.1 + 72407 0.67 0.871673
Target:  5'- aCCAGCGGCGgaGGCaCUgaggaaGAGGGCGa-- -3'
miRNA:   3'- gGGUCGCUGC--CCG-GAa-----CUUCCGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.