miRNA display CGI


Results 21 - 40 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14593 3' -58.8 NC_003521.1 + 1035 0.66 0.875773
Target:  5'- -cGcGCAGCCaGAuggcCGGCGUcggGGCCACc -3'
miRNA:   3'- caC-CGUCGG-CUuu--GCCGCG---UCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 103369 0.66 0.875773
Target:  5'- aGUGcacGCAGaCCGuguCGG-GCAGCCGCGc -3'
miRNA:   3'- -CAC---CGUC-GGCuuuGCCgCGUCGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 95145 0.66 0.875773
Target:  5'- -aGGCGGCCGcgccGACGGCaaggaguCGGCCGg- -3'
miRNA:   3'- caCCGUCGGCu---UUGCCGc------GUCGGUgu -5'
14593 3' -58.8 NC_003521.1 + 64749 0.66 0.875773
Target:  5'- cGUGGCcaagacGCCGGc-CGGCGCGGCaccggGCGa -3'
miRNA:   3'- -CACCGu-----CGGCUuuGCCGCGUCGg----UGU- -5'
14593 3' -58.8 NC_003521.1 + 76037 0.66 0.875773
Target:  5'- -cGGCAGCuccuCGGAGCGG-GCcGCCAg- -3'
miRNA:   3'- caCCGUCG----GCUUUGCCgCGuCGGUgu -5'
14593 3' -58.8 NC_003521.1 + 101052 0.66 0.875773
Target:  5'- aUGGCGGCCGccGACGGCcggauccugccGuCGGCaCGCGg -3'
miRNA:   3'- cACCGUCGGCu-UUGCCG-----------C-GUCG-GUGU- -5'
14593 3' -58.8 NC_003521.1 + 150663 0.66 0.875773
Target:  5'- -aGGCGGCUcuccgGcgGCGGCGCcGCUGCu -3'
miRNA:   3'- caCCGUCGG-----CuuUGCCGCGuCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 32133 0.66 0.875773
Target:  5'- -aGGUAGCgGgcGCGGUGCaccaAGCgGCGg -3'
miRNA:   3'- caCCGUCGgCuuUGCCGCG----UCGgUGU- -5'
14593 3' -58.8 NC_003521.1 + 168374 0.66 0.875076
Target:  5'- -cGGCAGUCGgcgggcaggauguAggUGGCGUuGCCGCc -3'
miRNA:   3'- caCCGUCGGC-------------UuuGCCGCGuCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 203737 0.66 0.874378
Target:  5'- gGUGGCAGUaCGAggUGGagauggugcccaGCAGCUGCc -3'
miRNA:   3'- -CACCGUCG-GCUuuGCCg-----------CGUCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 125786 0.66 0.871562
Target:  5'- -aGGCAGCCGGccuGCGaggcccagggguuguGCGUGGCCGu- -3'
miRNA:   3'- caCCGUCGGCUu--UGC---------------CGCGUCGGUgu -5'
14593 3' -58.8 NC_003521.1 + 40463 0.66 0.871562
Target:  5'- -cGGUcGCgGAAcggauagauguguccGCGGCGC-GCCACGg -3'
miRNA:   3'- caCCGuCGgCUU---------------UGCCGCGuCGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 175872 0.66 0.868714
Target:  5'- --aGCAGCCGAGA-GGUGCccAGCgACGa -3'
miRNA:   3'- cacCGUCGGCUUUgCCGCG--UCGgUGU- -5'
14593 3' -58.8 NC_003521.1 + 87643 0.66 0.868714
Target:  5'- -aGGCcucgcacaGGCUGGA--GGCGCAGcCCACGa -3'
miRNA:   3'- caCCG--------UCGGCUUugCCGCGUC-GGUGU- -5'
14593 3' -58.8 NC_003521.1 + 144919 0.66 0.868714
Target:  5'- -cGGUGGCCGAGGaguucauguCGcGCGUcGCCGCGc -3'
miRNA:   3'- caCCGUCGGCUUU---------GC-CGCGuCGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 115682 0.66 0.868714
Target:  5'- -aGGCGGCC-AGGCGGaaCAGCCGg- -3'
miRNA:   3'- caCCGUCGGcUUUGCCgcGUCGGUgu -5'
14593 3' -58.8 NC_003521.1 + 235288 0.66 0.868714
Target:  5'- -cGGCGGCCGcgcCGGCuGCcGUCACc -3'
miRNA:   3'- caCCGUCGGCuuuGCCG-CGuCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 164457 0.66 0.868714
Target:  5'- --cGCGGCCGucACGGuCGCcgcuGCCGCc -3'
miRNA:   3'- cacCGUCGGCuuUGCC-GCGu---CGGUGu -5'
14593 3' -58.8 NC_003521.1 + 70544 0.66 0.868714
Target:  5'- -cGGcCGGCCGAcACa--GCAGCCACu -3'
miRNA:   3'- caCC-GUCGGCUuUGccgCGUCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 97533 0.66 0.868714
Target:  5'- -gGGUGGUCGAGGCGcucgaacauGCGCGgGUCGCAg -3'
miRNA:   3'- caCCGUCGGCUUUGC---------CGCGU-CGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.