miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14594 3' -55 NC_003521.1 + 162980 0.67 0.962011
Target:  5'- uCAGUgGUGGgcacgGGUGGccccaacgAGAGCGCGcUGCu -3'
miRNA:   3'- -GUCG-CACCa----CCACU--------UCUCGCGUaGCG- -5'
14594 3' -55 NC_003521.1 + 123230 0.67 0.962011
Target:  5'- gCGGCGguaGGUGGUcgu-AGCGCcgCGCc -3'
miRNA:   3'- -GUCGCa--CCACCAcuucUCGCGuaGCG- -5'
14594 3' -55 NC_003521.1 + 210346 0.67 0.962011
Target:  5'- -uGC-UGGUGGUGAcggaggggcaGGuGCGCGUCa- -3'
miRNA:   3'- guCGcACCACCACU----------UCuCGCGUAGcg -5'
14594 3' -55 NC_003521.1 + 150548 0.67 0.962011
Target:  5'- cCGGCgGUGGUGGUGcGGgugguggcggcGGCgGCggCGCg -3'
miRNA:   3'- -GUCG-CACCACCACuUC-----------UCG-CGuaGCG- -5'
14594 3' -55 NC_003521.1 + 13602 0.67 0.962011
Target:  5'- uGGCGacgaGUGGaaUGggGGGCGCGagGCu -3'
miRNA:   3'- gUCGCac--CACC--ACuuCUCGCGUagCG- -5'
14594 3' -55 NC_003521.1 + 196463 0.67 0.961671
Target:  5'- gGGCGUGGgccgcagccccAGCGCGUCGCg -3'
miRNA:   3'- gUCGCACCaccacuuc---UCGCGUAGCG- -5'
14594 3' -55 NC_003521.1 + 184003 0.67 0.959942
Target:  5'- -cGCGUGGUGGguuAGAcguucccaccccgagGUGCcGUCGCg -3'
miRNA:   3'- guCGCACCACCacuUCU---------------CGCG-UAGCG- -5'
14594 3' -55 NC_003521.1 + 155633 0.67 0.958521
Target:  5'- uCGGCGgcGGUGGUaGcAGaAGCGCcgUGCu -3'
miRNA:   3'- -GUCGCa-CCACCA-CuUC-UCGCGuaGCG- -5'
14594 3' -55 NC_003521.1 + 232575 0.67 0.958521
Target:  5'- -uGUGUGGUGaGcGggGGGCGaCAUgCGUa -3'
miRNA:   3'- guCGCACCAC-CaCuuCUCGC-GUA-GCG- -5'
14594 3' -55 NC_003521.1 + 46173 0.67 0.958521
Target:  5'- -uGCGUGGgagUGGUGAuGGGCuGCAcggUGCu -3'
miRNA:   3'- guCGCACC---ACCACUuCUCG-CGUa--GCG- -5'
14594 3' -55 NC_003521.1 + 16551 0.67 0.958521
Target:  5'- -uGCGUGcaccugGGUGAGG-GCGCG-CGCc -3'
miRNA:   3'- guCGCACca----CCACUUCuCGCGUaGCG- -5'
14594 3' -55 NC_003521.1 + 115565 0.67 0.958521
Target:  5'- aGGCGUcGGgGGUGAu--GCGCAUCu- -3'
miRNA:   3'- gUCGCA-CCaCCACUucuCGCGUAGcg -5'
14594 3' -55 NC_003521.1 + 46025 0.67 0.958521
Target:  5'- uCAGaCGUGGggagGaGUGAGGGGCGCcaugaCGUu -3'
miRNA:   3'- -GUC-GCACCa---C-CACUUCUCGCGua---GCG- -5'
14594 3' -55 NC_003521.1 + 32507 0.67 0.95816
Target:  5'- aCAGuCGUccaGGUacucguaGGUGguGAGCGgAUCGCg -3'
miRNA:   3'- -GUC-GCA---CCA-------CCACuuCUCGCgUAGCG- -5'
14594 3' -55 NC_003521.1 + 122659 0.67 0.95816
Target:  5'- gGGCGUcgucugcGGcGGUGggGuG-GCGUCGCc -3'
miRNA:   3'- gUCGCA-------CCaCCACuuCuCgCGUAGCG- -5'
14594 3' -55 NC_003521.1 + 212212 0.67 0.957432
Target:  5'- aCGGCGUGcagcaccacguagcgGGUGAGGucGCGC-UCGCc -3'
miRNA:   3'- -GUCGCACca-------------CCACUUCu-CGCGuAGCG- -5'
14594 3' -55 NC_003521.1 + 103130 0.67 0.954817
Target:  5'- aGGC-UGGUGG-GGAGAGCccaggggcaGCAggCGCg -3'
miRNA:   3'- gUCGcACCACCaCUUCUCG---------CGUa-GCG- -5'
14594 3' -55 NC_003521.1 + 165155 0.67 0.954817
Target:  5'- cCGGCGUgauGGUGGUGAugauggugGGAcuGCGCcgcuGUUGCc -3'
miRNA:   3'- -GUCGCA---CCACCACU--------UCU--CGCG----UAGCG- -5'
14594 3' -55 NC_003521.1 + 86895 0.67 0.954435
Target:  5'- gCGGCG-GGUGGccGAGGAGUggaagcuGCA-CGCg -3'
miRNA:   3'- -GUCGCaCCACCa-CUUCUCG-------CGUaGCG- -5'
14594 3' -55 NC_003521.1 + 144910 0.67 0.950896
Target:  5'- aCGGCaugccGGUGGccGAGGAguucaugucGCGCGUCGCc -3'
miRNA:   3'- -GUCGca---CCACCa-CUUCU---------CGCGUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.