Results 21 - 40 of 168 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14594 | 5' | -63.7 | NC_003521.1 | + | 148424 | 0.66 | 0.676122 |
Target: 5'- -gGUGCGGGCGGccgcgccggcgGCUCCagggguGGCCGg -3' miRNA: 3'- cgCGCGUCCGCCa----------CGAGGgu----CCGGUg -5' |
|||||||
14594 | 5' | -63.7 | NC_003521.1 | + | 151053 | 0.66 | 0.676122 |
Target: 5'- uGCGCGCAGGacauaCUCUCGucuucGGCCGCg -3' miRNA: 3'- -CGCGCGUCCgccacGAGGGU-----CCGGUG- -5' |
|||||||
14594 | 5' | -63.7 | NC_003521.1 | + | 147451 | 0.66 | 0.676122 |
Target: 5'- cGCGCGCGGaaguaGCGGaugGCgcgaCAGGCCGu -3' miRNA: 3'- -CGCGCGUC-----CGCCa--CGagg-GUCCGGUg -5' |
|||||||
14594 | 5' | -63.7 | NC_003521.1 | + | 24661 | 0.66 | 0.676122 |
Target: 5'- -gGCGCuGGUGGUcaccuuccuguGCgCCCAGGUgGCc -3' miRNA: 3'- cgCGCGuCCGCCA-----------CGaGGGUCCGgUG- -5' |
|||||||
14594 | 5' | -63.7 | NC_003521.1 | + | 191267 | 0.66 | 0.666655 |
Target: 5'- cGCG-GCAGGUGGUGCUCUuCAugacGCC-Ca -3' miRNA: 3'- -CGCgCGUCCGCCACGAGG-GUc---CGGuG- -5' |
|||||||
14594 | 5' | -63.7 | NC_003521.1 | + | 180107 | 0.66 | 0.666655 |
Target: 5'- aGgGCaGCGGcGUGGUGCgaCCCGcGCCGCc -3' miRNA: 3'- -CgCG-CGUC-CGCCACGa-GGGUcCGGUG- -5' |
|||||||
14594 | 5' | -63.7 | NC_003521.1 | + | 123571 | 0.66 | 0.666655 |
Target: 5'- -gGCGguGGCGGgaugGCggcggcgCCgGGaGCCGCc -3' miRNA: 3'- cgCGCguCCGCCa---CGa------GGgUC-CGGUG- -5' |
|||||||
14594 | 5' | -63.7 | NC_003521.1 | + | 228982 | 0.66 | 0.666655 |
Target: 5'- gGUGCGCGGGCGGcGCaggaCC-GGCagCACg -3' miRNA: 3'- -CGCGCGUCCGCCaCGag--GGuCCG--GUG- -5' |
|||||||
14594 | 5' | -63.7 | NC_003521.1 | + | 56645 | 0.66 | 0.666655 |
Target: 5'- aGCGCaccaCGGGcCGGUGCaccUCCCgcucgcgcaccAGGUCGCa -3' miRNA: 3'- -CGCGc---GUCC-GCCACG---AGGG-----------UCCGGUG- -5' |
|||||||
14594 | 5' | -63.7 | NC_003521.1 | + | 125097 | 0.66 | 0.666655 |
Target: 5'- -gGUGCAGGCGcUGCgggaugggCaCCAcGGCCGCc -3' miRNA: 3'- cgCGCGUCCGCcACGa-------G-GGU-CCGGUG- -5' |
|||||||
14594 | 5' | -63.7 | NC_003521.1 | + | 129793 | 0.66 | 0.660962 |
Target: 5'- uGCGCGCcgAGGCcgaccgcgucaaguuGGUGCU---GGGCCGCc -3' miRNA: 3'- -CGCGCG--UCCG---------------CCACGAgggUCCGGUG- -5' |
|||||||
14594 | 5' | -63.7 | NC_003521.1 | + | 177745 | 0.66 | 0.657164 |
Target: 5'- aGCGCGCcGGCGcaGCUguaCgGGGUCGCg -3' miRNA: 3'- -CGCGCGuCCGCcaCGAg--GgUCCGGUG- -5' |
|||||||
14594 | 5' | -63.7 | NC_003521.1 | + | 148072 | 0.66 | 0.657164 |
Target: 5'- cGCGCGUcgacugguucAGGaCcGUGCucuggUCCCGGcGCCACg -3' miRNA: 3'- -CGCGCG----------UCC-GcCACG-----AGGGUC-CGGUG- -5' |
|||||||
14594 | 5' | -63.7 | NC_003521.1 | + | 34451 | 0.66 | 0.657164 |
Target: 5'- gGCGCuGCGGGCcugggGGUcGUcgCCgCAGGCCAg -3' miRNA: 3'- -CGCG-CGUCCG-----CCA-CGa-GG-GUCCGGUg -5' |
|||||||
14594 | 5' | -63.7 | NC_003521.1 | + | 69874 | 0.66 | 0.657164 |
Target: 5'- cCGCGCAGcGCcacg--CCCAGGCCAUa -3' miRNA: 3'- cGCGCGUC-CGccacgaGGGUCCGGUG- -5' |
|||||||
14594 | 5' | -63.7 | NC_003521.1 | + | 168138 | 0.66 | 0.657164 |
Target: 5'- -aGCGCcguggguggacgGGGCGGaauagggGCgccgCCCAGGCC-Ca -3' miRNA: 3'- cgCGCG------------UCCGCCa------CGa---GGGUCCGGuG- -5' |
|||||||
14594 | 5' | -63.7 | NC_003521.1 | + | 151986 | 0.66 | 0.657164 |
Target: 5'- uGCuGUGCuacgacGGCGGcgUGCUCaCCAaGGUCACg -3' miRNA: 3'- -CG-CGCGu-----CCGCC--ACGAG-GGU-CCGGUG- -5' |
|||||||
14594 | 5' | -63.7 | NC_003521.1 | + | 149182 | 0.66 | 0.653362 |
Target: 5'- gGCGCGCGucgccaccGGCGGccacgaggacuacGCcaCCCAGGcCCACa -3' miRNA: 3'- -CGCGCGU--------CCGCCa------------CGa-GGGUCC-GGUG- -5' |
|||||||
14594 | 5' | -63.7 | NC_003521.1 | + | 225847 | 0.66 | 0.647655 |
Target: 5'- gGCGCGCucguGGUGGUGCgggCaCAGGUg-- -3' miRNA: 3'- -CGCGCGu---CCGCCACGa--GgGUCCGgug -5' |
|||||||
14594 | 5' | -63.7 | NC_003521.1 | + | 109486 | 0.66 | 0.647655 |
Target: 5'- uGCGCGcCAGGCGcuccagcgaGUGgUCgCGccGGCCGCu -3' miRNA: 3'- -CGCGC-GUCCGC---------CACgAGgGU--CCGGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home