miRNA display CGI


Results 21 - 40 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14595 3' -56.9 NC_003521.1 + 38499 0.66 0.941587
Target:  5'- aGCACCGgca--GCag-UUCCAGCAGCa -3'
miRNA:   3'- -CGUGGCacuacCGgcaGAGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 94632 0.66 0.941587
Target:  5'- cGCAgU-UGAagGGCCGUCcgCCGGcCAGCa -3'
miRNA:   3'- -CGUgGcACUa-CCGGCAGa-GGUC-GUCG- -5'
14595 3' -56.9 NC_003521.1 + 168407 0.66 0.941587
Target:  5'- cCGCCGuUGGUGGCUagggCgGGCGGCa -3'
miRNA:   3'- cGUGGC-ACUACCGGcagaGgUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 34355 0.66 0.941587
Target:  5'- -gGCCGUGAggcccagguccUGGgCGUUgcgcaCCAGCAGg -3'
miRNA:   3'- cgUGGCACU-----------ACCgGCAGa----GGUCGUCg -5'
14595 3' -56.9 NC_003521.1 + 209090 0.66 0.941587
Target:  5'- gGCGgCGgaggcGGUGGCCGcggcgUC-CCAGCAcGCg -3'
miRNA:   3'- -CGUgGCa----CUACCGGC-----AGaGGUCGU-CG- -5'
14595 3' -56.9 NC_003521.1 + 238726 0.66 0.941587
Target:  5'- aGCACCGgca--GCag-UUCCAGCAGCa -3'
miRNA:   3'- -CGUGGCacuacCGgcaGAGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 166645 0.66 0.941587
Target:  5'- cGCGCCGg---GcGCCGcggCgcagcggCCAGCGGCa -3'
miRNA:   3'- -CGUGGCacuaC-CGGCa--Ga------GGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 59562 0.66 0.941587
Target:  5'- aCGCCGUGAUcgaaaacGCCgGUCUCUAcGUGGCc -3'
miRNA:   3'- cGUGGCACUAc------CGG-CAGAGGU-CGUCG- -5'
14595 3' -56.9 NC_003521.1 + 225849 0.66 0.940243
Target:  5'- cGCGCuCGUGGUGgugcgggcacagguGCCGgugCUCCAuGC-GCg -3'
miRNA:   3'- -CGUG-GCACUAC--------------CGGCa--GAGGU-CGuCG- -5'
14595 3' -56.9 NC_003521.1 + 66870 0.66 0.937031
Target:  5'- gGCACgGUGAcugUGGCCGagaCCAGUgacgaggaGGCa -3'
miRNA:   3'- -CGUGgCACU---ACCGGCagaGGUCG--------UCG- -5'
14595 3' -56.9 NC_003521.1 + 87778 0.66 0.937031
Target:  5'- -gGCC-UGggGGCCGccucgucggUCUCgGGCGGCc -3'
miRNA:   3'- cgUGGcACuaCCGGC---------AGAGgUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 39444 0.66 0.937031
Target:  5'- gGCGCCGUGGcucCCGgggaCGGCAGCg -3'
miRNA:   3'- -CGUGGCACUaccGGCagagGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 131900 0.66 0.937031
Target:  5'- cGCACUGaUGAUGGCCaucuacgcacuGUCggCCAucGUGGCc -3'
miRNA:   3'- -CGUGGC-ACUACCGG-----------CAGa-GGU--CGUCG- -5'
14595 3' -56.9 NC_003521.1 + 198445 0.66 0.937031
Target:  5'- aCGCCacgcGAuUGGCCGUCggCUGGCGGUg -3'
miRNA:   3'- cGUGGca--CU-ACCGGCAGa-GGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 58837 0.66 0.937031
Target:  5'- -gGCCGUGAcguuacUGGCgCGgaugC-CCAGCAGg -3'
miRNA:   3'- cgUGGCACU------ACCG-GCa---GaGGUCGUCg -5'
14595 3' -56.9 NC_003521.1 + 57408 0.66 0.937031
Target:  5'- aGCGCCGUGcgGucgcccaCCGUCUCgCGGacgGGCu -3'
miRNA:   3'- -CGUGGCACuaCc------GGCAGAG-GUCg--UCG- -5'
14595 3' -56.9 NC_003521.1 + 239671 0.66 0.937031
Target:  5'- gGCGCCGUGGcucCCGgggaCGGCAGCg -3'
miRNA:   3'- -CGUGGCACUaccGGCagagGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 195950 0.66 0.937031
Target:  5'- cCugCGUG--GGCCacaggCUCUGGCAGCg -3'
miRNA:   3'- cGugGCACuaCCGGca---GAGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 123673 0.66 0.937031
Target:  5'- gGCGCac-GAUGGCCaUCUgcgCCAGCuGCu -3'
miRNA:   3'- -CGUGgcaCUACCGGcAGA---GGUCGuCG- -5'
14595 3' -56.9 NC_003521.1 + 128484 0.66 0.937031
Target:  5'- aGCGgCGUGA-GGCUGUgCgcgCCGGCcuGCg -3'
miRNA:   3'- -CGUgGCACUaCCGGCA-Ga--GGUCGu-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.