miRNA display CGI


Results 21 - 40 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14595 5' -54.3 NC_003521.1 + 95 0.66 0.982867
Target:  5'- cGGGCGUgcaGGGAGGCCgaaGCGGCGgccggagccgUGCa -3'
miRNA:   3'- aUCUGCG---CCUUCUGG---UGCUGCa---------ACGc -5'
14595 5' -54.3 NC_003521.1 + 17688 0.66 0.9817
Target:  5'- gUGGuucuCGCGGAGGACCacauacuggcaacgcACGugGgUGCc -3'
miRNA:   3'- -AUCu---GCGCCUUCUGG---------------UGCugCaACGc -5'
14595 5' -54.3 NC_003521.1 + 14741 0.66 0.980889
Target:  5'- uUGGGCGUgacgGGccGGCCGCGGcCGggGCGc -3'
miRNA:   3'- -AUCUGCG----CCuuCUGGUGCU-GCaaCGC- -5'
14595 5' -54.3 NC_003521.1 + 2923 0.66 0.980889
Target:  5'- -cGACGCuGGAAGAaagcuaCCAU-ACGUUGUGg -3'
miRNA:   3'- auCUGCG-CCUUCU------GGUGcUGCAACGC- -5'
14595 5' -54.3 NC_003521.1 + 44751 0.66 0.980889
Target:  5'- cUGGACGCcGAgacGGACCGCGGaag-GCGg -3'
miRNA:   3'- -AUCUGCGcCU---UCUGGUGCUgcaaCGC- -5'
14595 5' -54.3 NC_003521.1 + 109654 0.66 0.980889
Target:  5'- gAGACGCGaGAugaugcAGACguaGCGGCGgaUGCGa -3'
miRNA:   3'- aUCUGCGC-CU------UCUGg--UGCUGCa-ACGC- -5'
14595 5' -54.3 NC_003521.1 + 90882 0.66 0.980889
Target:  5'- gGGACGgGGAGGGggACGACGaggaggGCGc -3'
miRNA:   3'- aUCUGCgCCUUCUggUGCUGCaa----CGC- -5'
14595 5' -54.3 NC_003521.1 + 86409 0.66 0.980889
Target:  5'- -cGACGCGGggGA-CGCG-CG-UGCc -3'
miRNA:   3'- auCUGCGCCuuCUgGUGCuGCaACGc -5'
14595 5' -54.3 NC_003521.1 + 132588 0.66 0.980889
Target:  5'- aAGAUGaUGGAAG-CgGCGGCGUcgGCGu -3'
miRNA:   3'- aUCUGC-GCCUUCuGgUGCUGCAa-CGC- -5'
14595 5' -54.3 NC_003521.1 + 95958 0.66 0.980889
Target:  5'- aAGAUGCGGuAGGCgUACGACag-GCGc -3'
miRNA:   3'- aUCUGCGCCuUCUG-GUGCUGcaaCGC- -5'
14595 5' -54.3 NC_003521.1 + 113599 0.66 0.980889
Target:  5'- ---uCGUGGAGGACCACcGCGccaGCGa -3'
miRNA:   3'- aucuGCGCCUUCUGGUGcUGCaa-CGC- -5'
14595 5' -54.3 NC_003521.1 + 97518 0.66 0.980889
Target:  5'- ---cCGCGGgcGACCacggagagagACGACGgcGCGa -3'
miRNA:   3'- aucuGCGCCuuCUGG----------UGCUGCaaCGC- -5'
14595 5' -54.3 NC_003521.1 + 86700 0.66 0.980889
Target:  5'- cGGGcCGCGGc-GGCgACGACGagGCGg -3'
miRNA:   3'- aUCU-GCGCCuuCUGgUGCUGCaaCGC- -5'
14595 5' -54.3 NC_003521.1 + 156173 0.66 0.980889
Target:  5'- -cGAgGCGGAGGAgacCCACGACauccccUGCa -3'
miRNA:   3'- auCUgCGCCUUCU---GGUGCUGca----ACGc -5'
14595 5' -54.3 NC_003521.1 + 190832 0.66 0.979622
Target:  5'- cAGGCGCGGugcgagacacaguaaGAGACCGuCGACGgaaGgGa -3'
miRNA:   3'- aUCUGCGCC---------------UUCUGGU-GCUGCaa-CgC- -5'
14595 5' -54.3 NC_003521.1 + 117730 0.66 0.978744
Target:  5'- -cGACGUGGGAGcgguACCcuuACGACGgaGCu -3'
miRNA:   3'- auCUGCGCCUUC----UGG---UGCUGCaaCGc -5'
14595 5' -54.3 NC_003521.1 + 163269 0.66 0.978744
Target:  5'- -uGACGCcggucucgucGGAAGAaaCCACGuccaGUUGCGa -3'
miRNA:   3'- auCUGCG----------CCUUCU--GGUGCug--CAACGC- -5'
14595 5' -54.3 NC_003521.1 + 166926 0.66 0.978744
Target:  5'- gUAGACGgGGc---CCACGGCcUUGCGg -3'
miRNA:   3'- -AUCUGCgCCuucuGGUGCUGcAACGC- -5'
14595 5' -54.3 NC_003521.1 + 25638 0.66 0.978744
Target:  5'- -uGGCGCGu--GACCACGACaucagGCGg -3'
miRNA:   3'- auCUGCGCcuuCUGGUGCUGcaa--CGC- -5'
14595 5' -54.3 NC_003521.1 + 28749 0.66 0.978744
Target:  5'- cAGACGCGcGcGGGCCGCGccaccgcccuaGCGcUGCa -3'
miRNA:   3'- aUCUGCGC-CuUCUGGUGC-----------UGCaACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.