miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14596 3' -56.5 NC_003521.1 + 145366 0.66 0.950089
Target:  5'- --aCGUGAUGCACgGgCGcGAGCCGg- -3'
miRNA:   3'- agaGCAUUGCGUGgCgGU-CUCGGCag -5'
14596 3' -56.5 NC_003521.1 + 230306 0.66 0.950089
Target:  5'- aCUUGaauguCGCGCCGCCuggGGGGCCa-- -3'
miRNA:   3'- aGAGCauu--GCGUGGCGG---UCUCGGcag -5'
14596 3' -56.5 NC_003521.1 + 130131 0.66 0.950089
Target:  5'- -gUCGUcGGCgGCGCCGCCGcuGCCGcCa -3'
miRNA:   3'- agAGCA-UUG-CGUGGCGGUcuCGGCaG- -5'
14596 3' -56.5 NC_003521.1 + 77075 0.66 0.949685
Target:  5'- --cCGUGAgCGCcgcuguuGCCGCCGGcGCCGcUCa -3'
miRNA:   3'- agaGCAUU-GCG-------UGGCGGUCuCGGC-AG- -5'
14596 3' -56.5 NC_003521.1 + 167737 0.66 0.949685
Target:  5'- --gCGUGGCGCugcggugGCCGgCGGAGCUGa- -3'
miRNA:   3'- agaGCAUUGCG-------UGGCgGUCUCGGCag -5'
14596 3' -56.5 NC_003521.1 + 164733 0.66 0.945954
Target:  5'- aUCUCGc--UGUACCGCCAGuccaaccuGCCG-Ca -3'
miRNA:   3'- -AGAGCauuGCGUGGCGGUCu-------CGGCaG- -5'
14596 3' -56.5 NC_003521.1 + 69171 0.66 0.945954
Target:  5'- gCUCccGACGC-CCGCCGcGGCCG-Cg -3'
miRNA:   3'- aGAGcaUUGCGuGGCGGUcUCGGCaG- -5'
14596 3' -56.5 NC_003521.1 + 76495 0.66 0.945954
Target:  5'- --cCGUGACGUAguCgGCCAGAGCgGg- -3'
miRNA:   3'- agaGCAUUGCGU--GgCGGUCUCGgCag -5'
14596 3' -56.5 NC_003521.1 + 14745 0.66 0.945954
Target:  5'- --gCGUGACGgGCCgGCCGcGGCCGg- -3'
miRNA:   3'- agaGCAUUGCgUGG-CGGUcUCGGCag -5'
14596 3' -56.5 NC_003521.1 + 55004 0.66 0.945954
Target:  5'- aCUUGUAgggcuuaagGCGCAgCGCCAGcGUCGg- -3'
miRNA:   3'- aGAGCAU---------UGCGUgGCGGUCuCGGCag -5'
14596 3' -56.5 NC_003521.1 + 182169 0.66 0.945954
Target:  5'- aCUCGUGACGgACgGCCGGcGC-GUg -3'
miRNA:   3'- aGAGCAUUGCgUGgCGGUCuCGgCAg -5'
14596 3' -56.5 NC_003521.1 + 37425 0.66 0.945954
Target:  5'- --gUGUGGCGCGgCGCC-GAGCC-UCu -3'
miRNA:   3'- agaGCAUUGCGUgGCGGuCUCGGcAG- -5'
14596 3' -56.5 NC_003521.1 + 149177 0.66 0.945954
Target:  5'- gUCUCGgcGCGCGUCGCCAccggcGGCCa-- -3'
miRNA:   3'- -AGAGCauUGCGUGGCGGUc----UCGGcag -5'
14596 3' -56.5 NC_003521.1 + 127985 0.66 0.943368
Target:  5'- gCUCGgccaUGACGC-CCGCCacGGAauccggggggucgcgGCCGUCc -3'
miRNA:   3'- aGAGC----AUUGCGuGGCGG--UCU---------------CGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 8018 0.66 0.9416
Target:  5'- --cCGUAGCuCcagACCGCCGGAGgCGUUg -3'
miRNA:   3'- agaGCAUUGcG---UGGCGGUCUCgGCAG- -5'
14596 3' -56.5 NC_003521.1 + 137850 0.66 0.9416
Target:  5'- gCUgGgc-CGCcCCGCCAGAGCCc-- -3'
miRNA:   3'- aGAgCauuGCGuGGCGGUCUCGGcag -5'
14596 3' -56.5 NC_003521.1 + 87997 0.66 0.9416
Target:  5'- aUCUgGggGCGCGCgaCGCC-GAGCUGUa -3'
miRNA:   3'- -AGAgCauUGCGUG--GCGGuCUCGGCAg -5'
14596 3' -56.5 NC_003521.1 + 106215 0.66 0.9416
Target:  5'- aUCUCcgaguGCGCGgCGCaCAuGGCCGUCu -3'
miRNA:   3'- -AGAGcau--UGCGUgGCG-GUcUCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 22110 0.66 0.9416
Target:  5'- uUCUCGc--C-CGCCGCCGccGCCGUCu -3'
miRNA:   3'- -AGAGCauuGcGUGGCGGUcuCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 205189 0.66 0.939797
Target:  5'- aUCUCGguaugaggguccgGAgGC-CCGuCCAGGGCCGg- -3'
miRNA:   3'- -AGAGCa------------UUgCGuGGC-GGUCUCGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.