miRNA display CGI


Results 41 - 60 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14596 5' -57 NC_003521.1 + 111185 0.67 0.924704
Target:  5'- gGCGACGGcGCCgcggacgguGGGCuGGGCGAUggcgccggaaagUGGGc -3'
miRNA:   3'- -CGCUGUCcCGG---------UCCG-UCCGCUA------------AUCC- -5'
14596 5' -57 NC_003521.1 + 103976 0.67 0.924704
Target:  5'- aGCG-CAGGcCCAGGguGGUGAa---- -3'
miRNA:   3'- -CGCuGUCCcGGUCCguCCGCUaaucc -5'
14596 5' -57 NC_003521.1 + 10499 0.67 0.924182
Target:  5'- cCGGCGGGGauggcguggccccCCAGGCGGcGCGAc---- -3'
miRNA:   3'- cGCUGUCCC-------------GGUCCGUC-CGCUaaucc -5'
14596 5' -57 NC_003521.1 + 113578 0.67 0.919386
Target:  5'- cGCGGUGGGGCUGGGCcucggGGGCaacgGGGg -3'
miRNA:   3'- -CGCUGUCCCGGUCCG-----UCCGcuaaUCC- -5'
14596 5' -57 NC_003521.1 + 93488 0.67 0.919386
Target:  5'- aGCucCGGGGUCGGGCGcgagauGGCGGacGGGu -3'
miRNA:   3'- -CGcuGUCCCGGUCCGU------CCGCUaaUCC- -5'
14596 5' -57 NC_003521.1 + 121887 0.67 0.919386
Target:  5'- aGCGACAuGGGCUccuGGCugGGGCaGAUggcccggcccgUGGGg -3'
miRNA:   3'- -CGCUGU-CCCGGu--CCG--UCCG-CUA-----------AUCC- -5'
14596 5' -57 NC_003521.1 + 150512 0.67 0.919386
Target:  5'- cCGGCGGGGCCcuGCuaGGaGCGGgagccgUGGGg -3'
miRNA:   3'- cGCUGUCCCGGucCG--UC-CGCUa-----AUCC- -5'
14596 5' -57 NC_003521.1 + 168372 0.67 0.919386
Target:  5'- aGCGGCAGucGG-CGGGCAGGaug-UAGGu -3'
miRNA:   3'- -CGCUGUC--CCgGUCCGUCCgcuaAUCC- -5'
14596 5' -57 NC_003521.1 + 239261 0.67 0.919386
Target:  5'- aGCGACGgcGGGUguGGCgccgAGGCGAa---- -3'
miRNA:   3'- -CGCUGU--CCCGguCCG----UCCGCUaaucc -5'
14596 5' -57 NC_003521.1 + 56248 0.67 0.919386
Target:  5'- aUGuCGGGGCUgAGGCAGGCcggcaggcagaGGUUGGa -3'
miRNA:   3'- cGCuGUCCCGG-UCCGUCCG-----------CUAAUCc -5'
14596 5' -57 NC_003521.1 + 116687 0.67 0.919386
Target:  5'- gGCGGCGGaGGCagCGGcGCGGGCGGg---- -3'
miRNA:   3'- -CGCUGUC-CCG--GUC-CGUCCGCUaaucc -5'
14596 5' -57 NC_003521.1 + 197830 0.67 0.919386
Target:  5'- cGCGACAcGGCCGucuGCAGGuCGucggUGGGc -3'
miRNA:   3'- -CGCUGUcCCGGUc--CGUCC-GCua--AUCC- -5'
14596 5' -57 NC_003521.1 + 200378 0.67 0.919386
Target:  5'- cGCGACcGGGCUAGaGCGcGCGAgcaccuGGc -3'
miRNA:   3'- -CGCUGuCCCGGUC-CGUcCGCUaau---CC- -5'
14596 5' -57 NC_003521.1 + 39033 0.67 0.919386
Target:  5'- aGCGACGgcGGGUguGGCgccgAGGCGAa---- -3'
miRNA:   3'- -CGCUGU--CCCGguCCG----UCCGCUaaucc -5'
14596 5' -57 NC_003521.1 + 105688 0.67 0.918842
Target:  5'- cCGAUGGGGUggcugcccaccagCAGGUAGGCGAagcggcGGGu -3'
miRNA:   3'- cGCUGUCCCG-------------GUCCGUCCGCUaa----UCC- -5'
14596 5' -57 NC_003521.1 + 7972 0.67 0.913848
Target:  5'- cGCGGCcgggAGGGuCCGcGGC-GGCGGgggAGGu -3'
miRNA:   3'- -CGCUG----UCCC-GGU-CCGuCCGCUaa-UCC- -5'
14596 5' -57 NC_003521.1 + 47573 0.67 0.913848
Target:  5'- gGCGAgcGGGCCAcGguGGCGGUcGGa -3'
miRNA:   3'- -CGCUguCCCGGUcCguCCGCUAaUCc -5'
14596 5' -57 NC_003521.1 + 117488 0.67 0.913848
Target:  5'- gGCGAC-GGGCCuguccggcgGGGCGuacGGCGGUaugcacuccgUGGGc -3'
miRNA:   3'- -CGCUGuCCCGG---------UCCGU---CCGCUA----------AUCC- -5'
14596 5' -57 NC_003521.1 + 32365 0.67 0.913848
Target:  5'- cGgGACGGGGCUuuuGguGGCGcgUGGc -3'
miRNA:   3'- -CgCUGUCCCGGuc-CguCCGCuaAUCc -5'
14596 5' -57 NC_003521.1 + 72841 0.67 0.90809
Target:  5'- cGCGAC--GGCCugGGGC-GGCGAcggUAGGc -3'
miRNA:   3'- -CGCUGucCCGG--UCCGuCCGCUa--AUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.