miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14597 3' -57.6 NC_003521.1 + 2351 0.66 0.926604
Target:  5'- -cCCUGGGccGCGucuCCGCCCCGcccgccgAGGc -3'
miRNA:   3'- guGGACCUucUGCu--GGCGGGGCa------UCC- -5'
14597 3' -57.6 NC_003521.1 + 17705 0.66 0.926604
Target:  5'- -uCCUGGugcugcgcGAGACGGCCGCcauCCCGcAGa -3'
miRNA:   3'- guGGACC--------UUCUGCUGGCG---GGGCaUCc -5'
14597 3' -57.6 NC_003521.1 + 155695 0.66 0.925077
Target:  5'- cCGCCgagGGAGGcuACGugccgcccgccgcuGCCGCCgCCGaUGGGg -3'
miRNA:   3'- -GUGGa--CCUUC--UGC--------------UGGCGG-GGC-AUCC- -5'
14597 3' -57.6 NC_003521.1 + 113068 0.67 0.921441
Target:  5'- gCACCUuccGGGcuacgaggcgcAGACGGCCGCCgUGgugcAGGa -3'
miRNA:   3'- -GUGGA---CCU-----------UCUGCUGGCGGgGCa---UCC- -5'
14597 3' -57.6 NC_003521.1 + 43631 0.67 0.921441
Target:  5'- gACgaGGAGGaggcgGCGGCCGCCgCCGgagagcagagAGGa -3'
miRNA:   3'- gUGgaCCUUC-----UGCUGGCGG-GGCa---------UCC- -5'
14597 3' -57.6 NC_003521.1 + 15849 0.67 0.921441
Target:  5'- --gCUGGuGGGCGACCGCUaCG-AGGa -3'
miRNA:   3'- gugGACCuUCUGCUGGCGGgGCaUCC- -5'
14597 3' -57.6 NC_003521.1 + 126876 0.67 0.916063
Target:  5'- gGCCUGcGucaguGAGACGugCGCgUCCGUGGc -3'
miRNA:   3'- gUGGAC-C-----UUCUGCugGCG-GGGCAUCc -5'
14597 3' -57.6 NC_003521.1 + 84862 0.67 0.916063
Target:  5'- gCACCguacGGuAGAaGGCCGCCCgGUccGGGu -3'
miRNA:   3'- -GUGGa---CCuUCUgCUGGCGGGgCA--UCC- -5'
14597 3' -57.6 NC_003521.1 + 65367 0.67 0.916063
Target:  5'- -uCCgGGGAGACGGCgCGCCgCCGa--- -3'
miRNA:   3'- guGGaCCUUCUGCUG-GCGG-GGCaucc -5'
14597 3' -57.6 NC_003521.1 + 174049 0.67 0.910472
Target:  5'- gCACgUGGGcuGCGAUCGCCUCGUc-- -3'
miRNA:   3'- -GUGgACCUucUGCUGGCGGGGCAucc -5'
14597 3' -57.6 NC_003521.1 + 5827 0.67 0.910472
Target:  5'- gGCCaGGggGACcgcuaccgcuggGACCGCa-CGUAGGc -3'
miRNA:   3'- gUGGaCCuuCUG------------CUGGCGggGCAUCC- -5'
14597 3' -57.6 NC_003521.1 + 230320 0.67 0.910472
Target:  5'- cCGCCUGGggGGCcacGCCauCCCCGccGGc -3'
miRNA:   3'- -GUGGACCuuCUGc--UGGc-GGGGCauCC- -5'
14597 3' -57.6 NC_003521.1 + 130888 0.67 0.910472
Target:  5'- uGCCUGcGGcgacAGAuCGACC-CCCCGUcAGGc -3'
miRNA:   3'- gUGGAC-CU----UCU-GCUGGcGGGGCA-UCC- -5'
14597 3' -57.6 NC_003521.1 + 137883 0.67 0.909901
Target:  5'- gCGCCUGGAccgcGACGccucggcccucaaACCGUaCCCGUGGc -3'
miRNA:   3'- -GUGGACCUu---CUGC-------------UGGCG-GGGCAUCc -5'
14597 3' -57.6 NC_003521.1 + 184610 0.67 0.904668
Target:  5'- cCACUucgGGGAGuACGA-CGCCCCGUGc- -3'
miRNA:   3'- -GUGGa--CCUUC-UGCUgGCGGGGCAUcc -5'
14597 3' -57.6 NC_003521.1 + 120232 0.67 0.904668
Target:  5'- cUACCggcaGGAGccGGCGGCCGCgCCGUGc- -3'
miRNA:   3'- -GUGGa---CCUU--CUGCUGGCGgGGCAUcc -5'
14597 3' -57.6 NC_003521.1 + 44818 0.67 0.904668
Target:  5'- gGCC-GGAGGGCGACacgccacaGCUCC-UGGGg -3'
miRNA:   3'- gUGGaCCUUCUGCUGg-------CGGGGcAUCC- -5'
14597 3' -57.6 NC_003521.1 + 59594 0.67 0.904668
Target:  5'- gCGCCaaGAAGgacgguagugGCGGCgGCCCCGgcGGc -3'
miRNA:   3'- -GUGGacCUUC----------UGCUGgCGGGGCauCC- -5'
14597 3' -57.6 NC_003521.1 + 88442 0.67 0.904668
Target:  5'- -uCCaGGGAGACGucguCCGCCUCGgcgucGGGc -3'
miRNA:   3'- guGGaCCUUCUGCu---GGCGGGGCa----UCC- -5'
14597 3' -57.6 NC_003521.1 + 168881 0.67 0.898654
Target:  5'- -cCCUGGcGGacuuGCGAaugagcgaCGUCCCGUAGGg -3'
miRNA:   3'- guGGACCuUC----UGCUg-------GCGGGGCAUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.