miRNA display CGI


Results 21 - 40 of 139 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14597 5' -53.3 NC_003521.1 + 225042 0.66 0.989271
Target:  5'- aUCACGuCGuccaacAACUGGUcGCguaGCUCGGGCa -3'
miRNA:   3'- cAGUGC-GCu-----UUGACCA-UG---UGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 183913 0.66 0.989271
Target:  5'- cGUCACgGCGcuguACcGGUGCAacaCCAGGg -3'
miRNA:   3'- -CAGUG-CGCuu--UGaCCAUGUg--GGUCCg -5'
14597 5' -53.3 NC_003521.1 + 53122 0.66 0.989271
Target:  5'- --aGCGCGAGAUcaGGUACacgcagucGCCCgaGGGCg -3'
miRNA:   3'- cagUGCGCUUUGa-CCAUG--------UGGG--UCCG- -5'
14597 5' -53.3 NC_003521.1 + 193267 0.66 0.989271
Target:  5'- gGUCGgcUGCGGAGCgGGUGCcgggaCGGGCg -3'
miRNA:   3'- -CAGU--GCGCUUUGaCCAUGugg--GUCCG- -5'
14597 5' -53.3 NC_003521.1 + 148341 0.66 0.989271
Target:  5'- -cCACGCccggaGAGGCUGGgagACcCCCgagcGGGCa -3'
miRNA:   3'- caGUGCG-----CUUUGACCa--UGuGGG----UCCG- -5'
14597 5' -53.3 NC_003521.1 + 45165 0.66 0.989271
Target:  5'- -gCACGCGuaaguGgUGGUGCGacuCCCuGGCc -3'
miRNA:   3'- caGUGCGCuu---UgACCAUGU---GGGuCCG- -5'
14597 5' -53.3 NC_003521.1 + 106754 0.66 0.989271
Target:  5'- cUC-CGCGuc-CaGG-GCGCCCAGGCg -3'
miRNA:   3'- cAGuGCGCuuuGaCCaUGUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 127710 0.66 0.988445
Target:  5'- cGUCGCGCac--CUGGcccgagagccgcuccUGCACCC-GGCg -3'
miRNA:   3'- -CAGUGCGcuuuGACC---------------AUGUGGGuCCG- -5'
14597 5' -53.3 NC_003521.1 + 117657 0.66 0.987867
Target:  5'- -gCGcCGCGAGAC-GGUGCGCC--GGCc -3'
miRNA:   3'- caGU-GCGCUUUGaCCAUGUGGguCCG- -5'
14597 5' -53.3 NC_003521.1 + 103133 0.66 0.987867
Target:  5'- --aGCGCGcgGC-GGUGCugcaGCaCCAGGCg -3'
miRNA:   3'- cagUGCGCuuUGaCCAUG----UG-GGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 93206 0.66 0.987867
Target:  5'- -gUACGUGAAgguGCaguucgGGUAcCACCUGGGCa -3'
miRNA:   3'- caGUGCGCUU---UGa-----CCAU-GUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 167806 0.66 0.987867
Target:  5'- gGUCgGCGUuggacaGGAGCUGG-ACcccCCCGGGCa -3'
miRNA:   3'- -CAG-UGCG------CUUUGACCaUGu--GGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 234041 0.66 0.987867
Target:  5'- cGUCugGUGGAccgGCaUGGUAC-UCCuGGCc -3'
miRNA:   3'- -CAGugCGCUU---UG-ACCAUGuGGGuCCG- -5'
14597 5' -53.3 NC_003521.1 + 136108 0.66 0.987867
Target:  5'- cGUCAaGaCGGGACUGGUGuacgaggcgcucUACCCcguGGCg -3'
miRNA:   3'- -CAGUgC-GCUUUGACCAU------------GUGGGu--CCG- -5'
14597 5' -53.3 NC_003521.1 + 222223 0.66 0.987867
Target:  5'- aGUCGCGuCGAcACguggccccuugGGUACACaaAGGCc -3'
miRNA:   3'- -CAGUGC-GCUuUGa----------CCAUGUGggUCCG- -5'
14597 5' -53.3 NC_003521.1 + 19164 0.66 0.987719
Target:  5'- -cCAC-CGAAAgagaggcCUGGcUACACCgCGGGCg -3'
miRNA:   3'- caGUGcGCUUU-------GACC-AUGUGG-GUCCG- -5'
14597 5' -53.3 NC_003521.1 + 58411 0.66 0.986959
Target:  5'- -cCGCGUGAuGCggcGGUugacgaagccgcagcGCugCCGGGCg -3'
miRNA:   3'- caGUGCGCUuUGa--CCA---------------UGugGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 203318 0.66 0.986325
Target:  5'- uGUCGC-UGAu-CUGGUACAgCguGGCg -3'
miRNA:   3'- -CAGUGcGCUuuGACCAUGUgGguCCG- -5'
14597 5' -53.3 NC_003521.1 + 99155 0.66 0.986325
Target:  5'- ----aGCGAGAC-GGUGCucugaCCGGGCa -3'
miRNA:   3'- cagugCGCUUUGaCCAUGug---GGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 170060 0.66 0.986325
Target:  5'- -cCACGUGcAGCUGGUGauCGgCCGcGGCg -3'
miRNA:   3'- caGUGCGCuUUGACCAU--GUgGGU-CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.