miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14598 3' -51.3 NC_003521.1 + 177263 0.66 0.998477
Target:  5'- ---gGCCGUAUCGCCcgugucgucuaagUCgUAUAUcGCCa -3'
miRNA:   3'- cuugCGGCAUGGCGG-------------AGgAUAUA-UGG- -5'
14598 3' -51.3 NC_003521.1 + 233078 0.66 0.998393
Target:  5'- gGGACuGCC--GCCGCCUCCgccgcucgcGCCg -3'
miRNA:   3'- -CUUG-CGGcaUGGCGGAGGauaua----UGG- -5'
14598 3' -51.3 NC_003521.1 + 24326 0.66 0.998213
Target:  5'- -cGCGUCGU-CgGCCUCCUGcucuuCCa -3'
miRNA:   3'- cuUGCGGCAuGgCGGAGGAUauau-GG- -5'
14598 3' -51.3 NC_003521.1 + 73217 0.66 0.998213
Target:  5'- cGAGCGCC-UGCggCGCCUCUgcgc-GCCg -3'
miRNA:   3'- -CUUGCGGcAUG--GCGGAGGauauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 42433 0.66 0.998213
Target:  5'- aAACGCCGgagucGCCGCCcgCCacaacGCCg -3'
miRNA:   3'- cUUGCGGCa----UGGCGGa-GGauauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 102794 0.66 0.998213
Target:  5'- -cGCGCCGgcgGCCGCCagCUcgGgcgGCa -3'
miRNA:   3'- cuUGCGGCa--UGGCGGagGAuaUa--UGg -5'
14598 3' -51.3 NC_003521.1 + 193196 0.66 0.998213
Target:  5'- aGAGcCGCCGUcacgGCCGCCUggaCgAUGgcgGCCa -3'
miRNA:   3'- -CUU-GCGGCA----UGGCGGAg--GaUAUa--UGG- -5'
14598 3' -51.3 NC_003521.1 + 105500 0.66 0.998213
Target:  5'- cGACGUCccagugguGUACCGCUcucuUCCUGUGgcuCCa -3'
miRNA:   3'- cUUGCGG--------CAUGGCGG----AGGAUAUau-GG- -5'
14598 3' -51.3 NC_003521.1 + 141440 0.66 0.998213
Target:  5'- --uCGCUGgACCGCCUCagagagGUGCUg -3'
miRNA:   3'- cuuGCGGCaUGGCGGAGgaua--UAUGG- -5'
14598 3' -51.3 NC_003521.1 + 59051 0.66 0.998213
Target:  5'- uGAGCGCCGUcuCCaGCUcguugUCCUcGUcgGCCg -3'
miRNA:   3'- -CUUGCGGCAu-GG-CGG-----AGGA-UAuaUGG- -5'
14598 3' -51.3 NC_003521.1 + 149850 0.66 0.998213
Target:  5'- --uCGgCGUucGCCGCCUCCUccc-GCCc -3'
miRNA:   3'- cuuGCgGCA--UGGCGGAGGAuauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 166016 0.66 0.998181
Target:  5'- cGGCGCCGUccguccgcgucucGCCGCUaCCgc--UGCCg -3'
miRNA:   3'- cUUGCGGCA-------------UGGCGGaGGauauAUGG- -5'
14598 3' -51.3 NC_003521.1 + 234594 0.66 0.998149
Target:  5'- gGAGCGCCGgucuccauucggACCGCCgUC---AUGCCg -3'
miRNA:   3'- -CUUGCGGCa-----------UGGCGGaGGauaUAUGG- -5'
14598 3' -51.3 NC_003521.1 + 186332 0.66 0.998117
Target:  5'- -cACGCCGgGCCGCCggccaucaaguucaUCCUGg--GCa -3'
miRNA:   3'- cuUGCGGCaUGGCGG--------------AGGAUauaUGg -5'
14598 3' -51.3 NC_003521.1 + 19628 0.66 0.997875
Target:  5'- uGACGCUGUcCUGCCugaugaucUCCaucGUGUGCCu -3'
miRNA:   3'- cUUGCGGCAuGGCGG--------AGGa--UAUAUGG- -5'
14598 3' -51.3 NC_003521.1 + 50332 0.66 0.997875
Target:  5'- cGGACGCCaaGUACCGUUUCCcggg-GCg -3'
miRNA:   3'- -CUUGCGG--CAUGGCGGAGGauauaUGg -5'
14598 3' -51.3 NC_003521.1 + 181218 0.66 0.997875
Target:  5'- --cCGCCGggGCCGCCgCCac--UACCg -3'
miRNA:   3'- cuuGCGGCa-UGGCGGaGGauauAUGG- -5'
14598 3' -51.3 NC_003521.1 + 184833 0.66 0.997875
Target:  5'- aGAACGCCGUggACCGgCUgCg----GCCc -3'
miRNA:   3'- -CUUGCGGCA--UGGCgGAgGauauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 96294 0.66 0.997875
Target:  5'- aAACuCCGUACCGUCUCaCUcgGgaaacaucUGCCg -3'
miRNA:   3'- cUUGcGGCAUGGCGGAG-GAuaU--------AUGG- -5'
14598 3' -51.3 NC_003521.1 + 17576 0.66 0.997875
Target:  5'- ---aGCUGUuCCGCCUUCgu--UGCCa -3'
miRNA:   3'- cuugCGGCAuGGCGGAGGauauAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.