miRNA display CGI


Results 21 - 40 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14598 5' -54.3 NC_003521.1 + 238450 0.66 0.973531
Target:  5'- gGAGgcGCaGGGCGGCcucGGCGGgcGGGGCg -3'
miRNA:   3'- -CUCuaCGaUUCGCCG---UCGUU--CCUCGg -5'
14598 5' -54.3 NC_003521.1 + 100432 0.66 0.973531
Target:  5'- gGAGGagGCgacGGgGGCGGaGAGGAGUCg -3'
miRNA:   3'- -CUCUa-CGau-UCgCCGUCgUUCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 38222 0.66 0.973531
Target:  5'- gGAGgcGCaGGGCGGCcucGGCGGgcGGGGCg -3'
miRNA:   3'- -CUCuaCGaUUCGCCG---UCGUU--CCUCGg -5'
14598 5' -54.3 NC_003521.1 + 221058 0.66 0.973531
Target:  5'- uAGAUGaCcGAGCGGUGGCugaaguGGaAGCCc -3'
miRNA:   3'- cUCUAC-GaUUCGCCGUCGuu----CC-UCGG- -5'
14598 5' -54.3 NC_003521.1 + 238276 0.66 0.973531
Target:  5'- ----cGCUuAGCccuugguuuuuGGCGGCGAGG-GCCa -3'
miRNA:   3'- cucuaCGAuUCG-----------CCGUCGUUCCuCGG- -5'
14598 5' -54.3 NC_003521.1 + 148391 0.66 0.973531
Target:  5'- --cGUGUUGAcGCGGUccacguGCgAGGGAGCCa -3'
miRNA:   3'- cucUACGAUU-CGCCGu-----CG-UUCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 44316 0.66 0.973531
Target:  5'- cGGGGUGCUGaAGCaGguGCuGGGcaAGCUg -3'
miRNA:   3'- -CUCUACGAU-UCGcCguCGuUCC--UCGG- -5'
14598 5' -54.3 NC_003521.1 + 168545 0.66 0.973531
Target:  5'- ----aGCgcGGCGGCGGCGcuGGcGGGCUg -3'
miRNA:   3'- cucuaCGauUCGCCGUCGU--UC-CUCGG- -5'
14598 5' -54.3 NC_003521.1 + 193177 0.66 0.97105
Target:  5'- aGGAgccgGCggGAGCGGCGGagcgugaagaagcgaGAGGGGCa -3'
miRNA:   3'- cUCUa---CGa-UUCGCCGUCg--------------UUCCUCGg -5'
14598 5' -54.3 NC_003521.1 + 91947 0.66 0.970764
Target:  5'- cGGcgGCggaccccGUGGCGGCGAGGgcggaacccggcGGCCg -3'
miRNA:   3'- cUCuaCGauu----CGCCGUCGUUCC------------UCGG- -5'
14598 5' -54.3 NC_003521.1 + 110162 0.66 0.970764
Target:  5'- -uGAcGCUGaggcGGCGGUAGCAcAGGAGg- -3'
miRNA:   3'- cuCUaCGAU----UCGCCGUCGU-UCCUCgg -5'
14598 5' -54.3 NC_003521.1 + 49921 0.66 0.970764
Target:  5'- gGAGAgg--GGGCGGCAGCuuccccGGGGAcGCUg -3'
miRNA:   3'- -CUCUacgaUUCGCCGUCG------UUCCU-CGG- -5'
14598 5' -54.3 NC_003521.1 + 61247 0.66 0.970764
Target:  5'- --uGUGuCUGAGCGucGCGGUguGGGGCCa -3'
miRNA:   3'- cucUAC-GAUUCGC--CGUCGuuCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 15221 0.66 0.970764
Target:  5'- uGGGGcUGC-AGGCGGCcgagcGCGAGGccGCCg -3'
miRNA:   3'- -CUCU-ACGaUUCGCCGu----CGUUCCu-CGG- -5'
14598 5' -54.3 NC_003521.1 + 119575 0.66 0.970764
Target:  5'- cGAGcaaccUGCUgauGAGCGGaCAGCAcaucuuccuGGAGCUg -3'
miRNA:   3'- -CUCu----ACGA---UUCGCC-GUCGUu--------CCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 75786 0.66 0.970764
Target:  5'- cAGGUGCaGAcgccGCGGCAGCAccaugcugAGGAaCCu -3'
miRNA:   3'- cUCUACGaUU----CGCCGUCGU--------UCCUcGG- -5'
14598 5' -54.3 NC_003521.1 + 6400 0.66 0.970764
Target:  5'- ----aGCUAccGCGGCGGCGacGGGucuuGCCg -3'
miRNA:   3'- cucuaCGAUu-CGCCGUCGU--UCCu---CGG- -5'
14598 5' -54.3 NC_003521.1 + 192448 0.66 0.970764
Target:  5'- aGAGggGCauGGCGGCGGCGccgguuuccAGGAcgGCg -3'
miRNA:   3'- -CUCuaCGauUCGCCGUCGU---------UCCU--CGg -5'
14598 5' -54.3 NC_003521.1 + 212612 0.66 0.970477
Target:  5'- gGGGAaGCUGGGCGGUuGCGauaccuuGGGcgacuuGGCCa -3'
miRNA:   3'- -CUCUaCGAUUCGCCGuCGU-------UCC------UCGG- -5'
14598 5' -54.3 NC_003521.1 + 138807 0.66 0.969008
Target:  5'- gGAGAUGCccuccauggcgcgccUGauGGCGGCGGCuacGGccugcGGCCa -3'
miRNA:   3'- -CUCUACG---------------AU--UCGCCGUCGuu-CC-----UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.