miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14599 3' -57.4 NC_003521.1 + 156135 0.66 0.909809
Target:  5'- gGCcuGGAGGUGugCACgCAGCuGCUGGc -3'
miRNA:   3'- gUGucCUUCCACugGUG-GUCG-CGGUC- -5'
14599 3' -57.4 NC_003521.1 + 136497 0.66 0.909809
Target:  5'- aGCAGGu-GGuUGACCACCucGGUGUCGc -3'
miRNA:   3'- gUGUCCuuCC-ACUGGUGG--UCGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 27509 0.66 0.909809
Target:  5'- cCACGGGggGcGUG-CgGCCcgaGGCGCCc- -3'
miRNA:   3'- -GUGUCCuuC-CACuGgUGG---UCGCGGuc -5'
14599 3' -57.4 NC_003521.1 + 74155 0.66 0.906263
Target:  5'- cCACGGGGcccAGGUG-CCGCUggccgacugcgccgcGGCGCCc- -3'
miRNA:   3'- -GUGUCCU---UCCACuGGUGG---------------UCGCGGuc -5'
14599 3' -57.4 NC_003521.1 + 68496 0.66 0.903855
Target:  5'- cCACAGGAc---GGCCgagGCCuGCGCCAGc -3'
miRNA:   3'- -GUGUCCUuccaCUGG---UGGuCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 217026 0.66 0.903247
Target:  5'- gACGGGAGGuGUcgaaggccgucacGGCCAacauaaagcCCAGCGCCGu -3'
miRNA:   3'- gUGUCCUUC-CA-------------CUGGU---------GGUCGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 123657 0.66 0.903247
Target:  5'- aACAGGuucagcgacAGGcgcacgaUGGCCAUCuGCGCCAGc -3'
miRNA:   3'- gUGUCCu--------UCC-------ACUGGUGGuCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 56022 0.67 0.897682
Target:  5'- -cCAGucGGAGGcGGCCACCagGGCGuCCAGg -3'
miRNA:   3'- guGUC--CUUCCaCUGGUGG--UCGC-GGUC- -5'
14599 3' -57.4 NC_003521.1 + 226390 0.67 0.897682
Target:  5'- cCGCAGGGccGUGugCACCA-CGUCAc -3'
miRNA:   3'- -GUGUCCUucCACugGUGGUcGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 203452 0.67 0.897052
Target:  5'- uGC-GGAAGGuUGGCCACCaagaagcAGCGCUc- -3'
miRNA:   3'- gUGuCCUUCC-ACUGGUGG-------UCGCGGuc -5'
14599 3' -57.4 NC_003521.1 + 18780 0.67 0.891292
Target:  5'- aCGCAGGc-GGUGGaggGCCAGCGCUg- -3'
miRNA:   3'- -GUGUCCuuCCACUgg-UGGUCGCGGuc -5'
14599 3' -57.4 NC_003521.1 + 107321 0.67 0.891292
Target:  5'- cCGCGGGuuGGgccCCGCagcagCGGCGCCAGg -3'
miRNA:   3'- -GUGUCCuuCCacuGGUG-----GUCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 23838 0.67 0.891292
Target:  5'- gGCGGGAGGccGACCuGCUGGCGCUg- -3'
miRNA:   3'- gUGUCCUUCcaCUGG-UGGUCGCGGuc -5'
14599 3' -57.4 NC_003521.1 + 179989 0.67 0.891292
Target:  5'- uGCGGGAAguccuGGUGGCUACUgaAG-GCCAGc -3'
miRNA:   3'- gUGUCCUU-----CCACUGGUGG--UCgCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 20281 0.67 0.891292
Target:  5'- aGC-GGAGugcGGUGGaucUCGCCGGCGCCAu -3'
miRNA:   3'- gUGuCCUU---CCACU---GGUGGUCGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 219148 0.67 0.891292
Target:  5'- gACAGGcAGGGU-ACCAgCAgGCGCCGc -3'
miRNA:   3'- gUGUCC-UUCCAcUGGUgGU-CGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 96045 0.67 0.887356
Target:  5'- aAgAGGcuGAGGggcucgucgucccaGACCGCCAGCaGCCGGg -3'
miRNA:   3'- gUgUCC--UUCCa-------------CUGGUGGUCG-CGGUC- -5'
14599 3' -57.4 NC_003521.1 + 136648 0.67 0.887356
Target:  5'- gCGCGGGgcGGcGgcgacagagcaagaaGCCACacaGGCGCCGGg -3'
miRNA:   3'- -GUGUCCuuCCaC---------------UGGUGg--UCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 180492 0.67 0.884689
Target:  5'- gCGCAGGuuGGccGGCugCAUCAGCGCCGu -3'
miRNA:   3'- -GUGUCCuuCCa-CUG--GUGGUCGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 19149 0.67 0.884689
Target:  5'- cCACGGcguGGUGACCGagagcaCGGCGCUGGu -3'
miRNA:   3'- -GUGUCcuuCCACUGGUg-----GUCGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.