Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14599 | 5' | -63 | NC_003521.1 | + | 191887 | 0.66 | 0.733536 |
Target: 5'- -aCUGGGCGgCGGCGCcacGUCCUUCa -3' miRNA: 3'- gcGACUCGUgGCCGCGcccCAGGAGG- -5' |
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14599 | 5' | -63 | NC_003521.1 | + | 232362 | 0.66 | 0.733536 |
Target: 5'- uCGCggcGGCACCGcgaaGCGGaGGUCCaCCg -3' miRNA: 3'- -GCGac-UCGUGGCcg--CGCC-CCAGGaGG- -5' |
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14599 | 5' | -63 | NC_003521.1 | + | 106355 | 0.66 | 0.733536 |
Target: 5'- -uUUGGGCugCGGUaGCGGGGaaccgccaUCUCCg -3' miRNA: 3'- gcGACUCGugGCCG-CGCCCCa-------GGAGG- -5' |
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14599 | 5' | -63 | NC_003521.1 | + | 119619 | 0.66 | 0.732634 |
Target: 5'- uGCUGcAGguggacguuuaccCACUGGcCGCGGGcGUCCgucUCCg -3' miRNA: 3'- gCGAC-UC-------------GUGGCC-GCGCCC-CAGG---AGG- -5' |
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14599 | 5' | -63 | NC_003521.1 | + | 236837 | 0.66 | 0.724481 |
Target: 5'- uCGCgccaGAccuccGCGCCugacGGUGCcccGGGUCCUCCg -3' miRNA: 3'- -GCGa---CU-----CGUGG----CCGCGc--CCCAGGAGG- -5' |
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14599 | 5' | -63 | NC_003521.1 | + | 72299 | 0.66 | 0.724481 |
Target: 5'- gCGCUGgccgccAGCcuGCUGGCGuCGccGUCCUCCg -3' miRNA: 3'- -GCGAC------UCG--UGGCCGC-GCccCAGGAGG- -5' |
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14599 | 5' | -63 | NC_003521.1 | + | 164836 | 0.66 | 0.715359 |
Target: 5'- uGCUGAcgGCGcCCGGCGa-GGGcCgCUCCu -3' miRNA: 3'- gCGACU--CGU-GGCCGCgcCCCaG-GAGG- -5' |
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14599 | 5' | -63 | NC_003521.1 | + | 71475 | 0.66 | 0.715359 |
Target: 5'- uGCUGGcGCGCCGaCGCGacuGGUCCUa- -3' miRNA: 3'- gCGACU-CGUGGCcGCGCc--CCAGGAgg -5' |
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14599 | 5' | -63 | NC_003521.1 | + | 197270 | 0.66 | 0.706177 |
Target: 5'- aCGC--GGCGCCGGCgGCGGGGagCg-- -3' miRNA: 3'- -GCGacUCGUGGCCG-CGCCCCagGagg -5' |
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14599 | 5' | -63 | NC_003521.1 | + | 202736 | 0.66 | 0.706177 |
Target: 5'- aCGC--GGCAggGGCGCGGGGaCC-CCg -3' miRNA: 3'- -GCGacUCGUggCCGCGCCCCaGGaGG- -5' |
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14599 | 5' | -63 | NC_003521.1 | + | 131044 | 0.66 | 0.706177 |
Target: 5'- -cCUGGGCGgCGGCgGCGGG--CCUCUg -3' miRNA: 3'- gcGACUCGUgGCCG-CGCCCcaGGAGG- -5' |
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14599 | 5' | -63 | NC_003521.1 | + | 195997 | 0.66 | 0.706177 |
Target: 5'- aGCcccagGAGCugUGGCGUGucGcCCUCCg -3' miRNA: 3'- gCGa----CUCGugGCCGCGCccCaGGAGG- -5' |
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14599 | 5' | -63 | NC_003521.1 | + | 221351 | 0.66 | 0.706177 |
Target: 5'- cCGCUuuGCGgCGGUaGaggaGGGGUCCUCg -3' miRNA: 3'- -GCGAcuCGUgGCCG-Cg---CCCCAGGAGg -5' |
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14599 | 5' | -63 | NC_003521.1 | + | 63086 | 0.66 | 0.706177 |
Target: 5'- aGCU--GCGCCGGCGCGcugcccGcCCUCCa -3' miRNA: 3'- gCGAcuCGUGGCCGCGCcc----CaGGAGG- -5' |
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14599 | 5' | -63 | NC_003521.1 | + | 110645 | 0.67 | 0.696942 |
Target: 5'- uCGCcGGGCGCCGGCaCGGucacggcccGGUCggCCa -3' miRNA: 3'- -GCGaCUCGUGGCCGcGCC---------CCAGgaGG- -5' |
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14599 | 5' | -63 | NC_003521.1 | + | 131341 | 0.67 | 0.696942 |
Target: 5'- uCGCUgGAGCGCCuGGCGCGcauGUUC-CCa -3' miRNA: 3'- -GCGA-CUCGUGG-CCGCGCcc-CAGGaGG- -5' |
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14599 | 5' | -63 | NC_003521.1 | + | 15248 | 0.67 | 0.696942 |
Target: 5'- cCGCcGAGCGCCaGGaCGacacGGGUCC-CCg -3' miRNA: 3'- -GCGaCUCGUGG-CC-GCgc--CCCAGGaGG- -5' |
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14599 | 5' | -63 | NC_003521.1 | + | 74171 | 0.67 | 0.694162 |
Target: 5'- cCGCUGgccgacugcgccgcGGCGcCCGGCGCGcGGcCCgacgCCg -3' miRNA: 3'- -GCGAC--------------UCGU-GGCCGCGCcCCaGGa---GG- -5' |
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14599 | 5' | -63 | NC_003521.1 | + | 77959 | 0.67 | 0.687661 |
Target: 5'- uGCUGGGUcuuggaGCCGGcCGCGGGcUCg-CCg -3' miRNA: 3'- gCGACUCG------UGGCC-GCGCCCcAGgaGG- -5' |
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14599 | 5' | -63 | NC_003521.1 | + | 11568 | 0.67 | 0.687661 |
Target: 5'- cCGUcGuGCGCCGGacucuGCGGGGUCUg-- -3' miRNA: 3'- -GCGaCuCGUGGCCg----CGCCCCAGGagg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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