miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
146 5' -54.6 AC_000006.1 + 25552 0.67 0.535908
Target:  5'- --gGAGGCGCccgcggccagGCCCAUCUGGGGc--- -3'
miRNA:   3'- ugaUUCCGCG----------CGGGUGGGCCUUuuuu -5'
146 5' -54.6 AC_000006.1 + 21071 0.68 0.427573
Target:  5'- uGCUAcaaucgccacAGGUGCuGCCCACCCucaggcgcaaccaGGAGGAGc -3'
miRNA:   3'- -UGAU----------UCCGCG-CGGGUGGG-------------CCUUUUUu -5'
146 5' -54.6 AC_000006.1 + 10495 0.69 0.418546
Target:  5'- gACUAcGGGCGCGagccaCUACCCGGcgGGGu -3'
miRNA:   3'- -UGAU-UCCGCGCg----GGUGGGCCuuUUUu -5'
146 5' -54.6 AC_000006.1 + 11694 0.71 0.310004
Target:  5'- --cAAGGCGCGCCgGCUCGGc----- -3'
miRNA:   3'- ugaUUCCGCGCGGgUGGGCCuuuuuu -5'
146 5' -54.6 AC_000006.1 + 10745 0.72 0.257266
Target:  5'- gACUGGGG-GCGCCUucCCCGGAGc--- -3'
miRNA:   3'- -UGAUUCCgCGCGGGu-GGGCCUUuuuu -5'
146 5' -54.6 AC_000006.1 + 136 0.72 0.250361
Target:  5'- cGCgGAGGCGUGgCCuaGCCCGGAAGc-- -3'
miRNA:   3'- -UGaUUCCGCGCgGG--UGGGCCUUUuuu -5'
146 5' -54.6 AC_000006.1 + 25396 1.06 0.000832
Target:  5'- gACUAAGGCGCGCCCACCCGGAAAAAAg -3'
miRNA:   3'- -UGAUUCCGCGCGGGUGGGCCUUUUUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.