miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1460 5' -58.4 NC_001335.1 + 726 0.66 0.570627
Target:  5'- cGCGGUcGaGAAGGcGCUCgGGGGACg -3'
miRNA:   3'- cCGCCGaC-CUUCCaCGGGgCCUUUGg -5'
1460 5' -58.4 NC_001335.1 + 50778 0.66 0.570627
Target:  5'- gGGCGcGUUGGcucgcGGUGCCUuaCGGAuggcgguGCCu -3'
miRNA:   3'- -CCGC-CGACCuu---CCACGGG--GCCUu------UGG- -5'
1460 5' -58.4 NC_001335.1 + 44482 0.66 0.560043
Target:  5'- cGGCGGCgGGuucAGGUacGuCCCCcGAGGCa -3'
miRNA:   3'- -CCGCCGaCCu--UCCA--C-GGGGcCUUUGg -5'
1460 5' -58.4 NC_001335.1 + 3226 0.66 0.549514
Target:  5'- aGCGGCUGGuagcGGcagcgGCUCUaGAAACCc -3'
miRNA:   3'- cCGCCGACCuu--CCa----CGGGGcCUUUGG- -5'
1460 5' -58.4 NC_001335.1 + 26669 0.66 0.518327
Target:  5'- aGCGGUcuccUGGAuGGaUGCuCUCGGggGCa -3'
miRNA:   3'- cCGCCG----ACCUuCC-ACG-GGGCCuuUGg -5'
1460 5' -58.4 NC_001335.1 + 1082 0.67 0.49793
Target:  5'- gGGaGGCcggGGAaguaaAGGcgGCCCCGGucccgGAACCg -3'
miRNA:   3'- -CCgCCGa--CCU-----UCCa-CGGGGCC-----UUUGG- -5'
1460 5' -58.4 NC_001335.1 + 11778 0.67 0.49793
Target:  5'- aGGCGGUcgcgaccuUGGuccgcauGGUGCCCaGGuaguuGGCCg -3'
miRNA:   3'- -CCGCCG--------ACCuu-----CCACGGGgCCu----UUGG- -5'
1460 5' -58.4 NC_001335.1 + 10282 0.67 0.487866
Target:  5'- --gGGCUGGGcgaGGGUcGCCaCCGGgcGCg -3'
miRNA:   3'- ccgCCGACCU---UCCA-CGG-GGCCuuUGg -5'
1460 5' -58.4 NC_001335.1 + 36484 0.68 0.43625
Target:  5'- cGGCGGCaaccaGAAGGUGCUguggucgauggaggUCGGcAACCu -3'
miRNA:   3'- -CCGCCGac---CUUCCACGG--------------GGCCuUUGG- -5'
1460 5' -58.4 NC_001335.1 + 1211 0.68 0.420369
Target:  5'- aGGCGGCaagGGAAcGGcagcGCCgguaCCGGAGGCg -3'
miRNA:   3'- -CCGCCGa--CCUU-CCa---CGG----GGCCUUUGg -5'
1460 5' -58.4 NC_001335.1 + 9864 0.68 0.411192
Target:  5'- cGGCGGUgccguGGG-GCUCgGGGAGCCu -3'
miRNA:   3'- -CCGCCGaccu-UCCaCGGGgCCUUUGG- -5'
1460 5' -58.4 NC_001335.1 + 7937 0.69 0.384422
Target:  5'- -aCGGCgGGGAGGUuCCCCGcGAAgacguugacGCCa -3'
miRNA:   3'- ccGCCGaCCUUCCAcGGGGC-CUU---------UGG- -5'
1460 5' -58.4 NC_001335.1 + 44181 0.69 0.384422
Target:  5'- aGGCGuGgUGGAAGG-GCCaaCUGGAcgaaGACCc -3'
miRNA:   3'- -CCGC-CgACCUUCCaCGG--GGCCU----UUGG- -5'
1460 5' -58.4 NC_001335.1 + 9480 0.69 0.375759
Target:  5'- cGGCGGCgcaugGGAAGaG-GCCaugCGGAucGCCu -3'
miRNA:   3'- -CCGCCGa----CCUUC-CaCGGg--GCCUu-UGG- -5'
1460 5' -58.4 NC_001335.1 + 39294 0.7 0.342447
Target:  5'- gGGCGGCgaaGAGGU-CUCCGGGGuACCg -3'
miRNA:   3'- -CCGCCGaccUUCCAcGGGGCCUU-UGG- -5'
1460 5' -58.4 NC_001335.1 + 11902 0.7 0.326608
Target:  5'- aGGuCGGCguUGGAGccGGUGCCguCCGGGuccACCa -3'
miRNA:   3'- -CC-GCCG--ACCUU--CCACGG--GGCCUu--UGG- -5'
1460 5' -58.4 NC_001335.1 + 23751 0.7 0.326608
Target:  5'- -aCGGCUGGGgcagAGGUGgagaCgCCGGAAGCUg -3'
miRNA:   3'- ccGCCGACCU----UCCACg---G-GGCCUUUGG- -5'
1460 5' -58.4 NC_001335.1 + 18835 0.7 0.326608
Target:  5'- cGUGGCcgUGGGAGGaacUGCCCaaGGAGACg -3'
miRNA:   3'- cCGCCG--ACCUUCC---ACGGGg-CCUUUGg -5'
1460 5' -58.4 NC_001335.1 + 14930 0.72 0.236952
Target:  5'- gGGUGGCUGucaaguuGGGaucaGCCCuCGGGAACCu -3'
miRNA:   3'- -CCGCCGACcu-----UCCa---CGGG-GCCUUUGG- -5'
1460 5' -58.4 NC_001335.1 + 24093 0.74 0.178056
Target:  5'- cGGCGGCggGGcuGGUGCCCaGGucuCCg -3'
miRNA:   3'- -CCGCCGa-CCuuCCACGGGgCCuuuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.