miRNA display CGI


Results 21 - 40 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14600 3' -58 NC_003521.1 + 144042 0.66 0.925693
Target:  5'- aGCGCCGcCGCUGcugccGGCGgcGACg -3'
miRNA:   3'- gCGCGGCuGCGGCccuu-UCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 200442 0.66 0.925693
Target:  5'- uGCGCCacGACGCCGacAucGUGGAGAa -3'
miRNA:   3'- gCGCGG--CUGCGGCccUuuCGCUUCUg -5'
14600 3' -58 NC_003521.1 + 49114 0.66 0.925693
Target:  5'- gCGCGUggugaccgCGGCGCCGcugcuGCGggGACu -3'
miRNA:   3'- -GCGCG--------GCUGCGGCccuuuCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 155616 0.66 0.92518
Target:  5'- gGCG-CGGCGCCGGGuGAcgcagugucguacGCGAccgagcaagGGACg -3'
miRNA:   3'- gCGCgGCUGCGGCCCuUU-------------CGCU---------UCUG- -5'
14600 3' -58 NC_003521.1 + 31006 0.66 0.924147
Target:  5'- gGCGacgaCGGCGCCGGcGAGgacgcguucgugguGGUGggGGg -3'
miRNA:   3'- gCGCg---GCUGCGGCC-CUU--------------UCGCuuCUg -5'
14600 3' -58 NC_003521.1 + 40888 0.66 0.924147
Target:  5'- aGgGaCCGGgGCgGGGGucaguuuaauagcgAGGCGggGGCg -3'
miRNA:   3'- gCgC-GGCUgCGgCCCU--------------UUCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 43561 0.66 0.924147
Target:  5'- cCGcCGCCGGCGCCGcGucAagcaccgcuccucgGGCGgcGACg -3'
miRNA:   3'- -GC-GCGGCUGCGGC-CcuU--------------UCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 135917 0.66 0.920465
Target:  5'- uGUGCCGGCcucggccacgGCCGcGGGAuguGCGAcgccucGGGCg -3'
miRNA:   3'- gCGCGGCUG----------CGGC-CCUUu--CGCU------UCUG- -5'
14600 3' -58 NC_003521.1 + 128500 0.66 0.920465
Target:  5'- gCGCGCCGGC-CUGcGAcAGCGAgucgcuGGGCa -3'
miRNA:   3'- -GCGCGGCUGcGGCcCUuUCGCU------UCUG- -5'
14600 3' -58 NC_003521.1 + 83684 0.66 0.920465
Target:  5'- uCGCGCgUGACGuuGuGGAcgcGCGAgcGGGCg -3'
miRNA:   3'- -GCGCG-GCUGCggC-CCUuu-CGCU--UCUG- -5'
14600 3' -58 NC_003521.1 + 53351 0.66 0.920465
Target:  5'- -aCGCCGGCGCggCGGcGGAGGgGccGACa -3'
miRNA:   3'- gcGCGGCUGCG--GCC-CUUUCgCuuCUG- -5'
14600 3' -58 NC_003521.1 + 166076 0.66 0.920465
Target:  5'- uCGaCGgCGACGCCagucGGGAGAcCGAcGACg -3'
miRNA:   3'- -GC-GCgGCUGCGG----CCCUUUcGCUuCUG- -5'
14600 3' -58 NC_003521.1 + 90162 0.66 0.920465
Target:  5'- gGCGCCGcCGCCGG-AGAGCc----- -3'
miRNA:   3'- gCGCGGCuGCGGCCcUUUCGcuucug -5'
14600 3' -58 NC_003521.1 + 198265 0.66 0.920465
Target:  5'- gGcCGCCGGacagccaGCCGGGcGucGCGGAGGa -3'
miRNA:   3'- gC-GCGGCUg------CGGCCC-UuuCGCUUCUg -5'
14600 3' -58 NC_003521.1 + 98894 0.66 0.920465
Target:  5'- gGCGCCGuCGUCGc---GGCGGAGAa -3'
miRNA:   3'- gCGCGGCuGCGGCccuuUCGCUUCUg -5'
14600 3' -58 NC_003521.1 + 17063 0.66 0.920465
Target:  5'- aGCGCCGACGauaCCGcu--GGCGgcGACc -3'
miRNA:   3'- gCGCGGCUGC---GGCccuuUCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 148893 0.66 0.920465
Target:  5'- cCGUgGCCGACGCCGaGGAgcGCcgccgcGGCa -3'
miRNA:   3'- -GCG-CGGCUGCGGC-CCUuuCGcuu---CUG- -5'
14600 3' -58 NC_003521.1 + 201248 0.66 0.918855
Target:  5'- -cCGCCGACGCCGGcaggacuccgaugcGAAcuCGGAGGg -3'
miRNA:   3'- gcGCGGCUGCGGCC--------------CUUucGCUUCUg -5'
14600 3' -58 NC_003521.1 + 201537 0.66 0.915021
Target:  5'- cCGCuaCGGCGCCGGcGAcguGGCGc-GGCu -3'
miRNA:   3'- -GCGcgGCUGCGGCC-CUu--UCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 223782 0.66 0.915021
Target:  5'- gGCGCCGuuacCGCCGuGGGccGCc-AGACg -3'
miRNA:   3'- gCGCGGCu---GCGGC-CCUuuCGcuUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.