miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14600 5' -55.7 NC_003521.1 + 162780 0.66 0.958298
Target:  5'- uGGUGGacugCGUGGaCGGCGa---AGGCAa -3'
miRNA:   3'- gCCACCa---GCGCC-GCUGCaauaUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 168429 0.66 0.957941
Target:  5'- gCGGcagGGcCGCGGCGGCGggcGUgaagagcgugaugGGGCGc -3'
miRNA:   3'- -GCCa--CCaGCGCCGCUGCaa-UA-------------UCCGU- -5'
14600 5' -55.7 NC_003521.1 + 121819 0.67 0.95463
Target:  5'- uGGUGGgguaGUGGUGcACGUUGaugucGGGCAc -3'
miRNA:   3'- gCCACCag--CGCCGC-UGCAAUa----UCCGU- -5'
14600 5' -55.7 NC_003521.1 + 196392 0.67 0.95463
Target:  5'- uGcGUGGUgaaggGCGGCGGCagguagagcagGUUGUAGGCc -3'
miRNA:   3'- gC-CACCAg----CGCCGCUG-----------CAAUAUCCGu -5'
14600 5' -55.7 NC_003521.1 + 25570 0.67 0.95463
Target:  5'- aGGcGGcCGCGGgGACag-GUGGGCu -3'
miRNA:   3'- gCCaCCaGCGCCgCUGcaaUAUCCGu -5'
14600 5' -55.7 NC_003521.1 + 172554 0.67 0.95463
Target:  5'- uGGUGGaUGCuGGgGAUGUUGaaGGGCAg -3'
miRNA:   3'- gCCACCaGCG-CCgCUGCAAUa-UCCGU- -5'
14600 5' -55.7 NC_003521.1 + 232219 0.67 0.950749
Target:  5'- uGGUGGUggcugUGCGGCGucUGUUGUuGGUg -3'
miRNA:   3'- gCCACCA-----GCGCCGCu-GCAAUAuCCGu -5'
14600 5' -55.7 NC_003521.1 + 142760 0.67 0.950749
Target:  5'- aCGG-GGUgaccagcgucCGCGGCGGCGUcGUcGGUg -3'
miRNA:   3'- -GCCaCCA----------GCGCCGCUGCAaUAuCCGu -5'
14600 5' -55.7 NC_003521.1 + 111201 0.67 0.950749
Target:  5'- aCGGUGGgcugggCGaUGGCGcCGgaaaGUGGGCGa -3'
miRNA:   3'- -GCCACCa-----GC-GCCGCuGCaa--UAUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 91937 0.67 0.945808
Target:  5'- gCGGUGGaCcCGGCGGCGgaccccguGGCGg -3'
miRNA:   3'- -GCCACCaGcGCCGCUGCaauau---CCGU- -5'
14600 5' -55.7 NC_003521.1 + 219703 0.67 0.942338
Target:  5'- uGGcgGGUCGuCGGCaGCGg---AGGCAa -3'
miRNA:   3'- gCCa-CCAGC-GCCGcUGCaauaUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 124381 0.67 0.942338
Target:  5'- cCGcGUcGUCGUGGuUGACGUUGagAGGCAu -3'
miRNA:   3'- -GC-CAcCAGCGCC-GCUGCAAUa-UCCGU- -5'
14600 5' -55.7 NC_003521.1 + 141198 0.67 0.937803
Target:  5'- gGGUGGcCGUGGCGcuGCGccgccGGGCGc -3'
miRNA:   3'- gCCACCaGCGCCGC--UGCaaua-UCCGU- -5'
14600 5' -55.7 NC_003521.1 + 98425 0.67 0.937803
Target:  5'- cCGGUGGUgGCGG-GGCGggcGUAcGGUg -3'
miRNA:   3'- -GCCACCAgCGCCgCUGCaa-UAU-CCGu -5'
14600 5' -55.7 NC_003521.1 + 92176 0.67 0.937803
Target:  5'- cCGGgGGUCGgGGCGAUGcccu-GGCc -3'
miRNA:   3'- -GCCaCCAGCgCCGCUGCaauauCCGu -5'
14600 5' -55.7 NC_003521.1 + 166858 0.67 0.937803
Target:  5'- gCGGUGG-CGCGGCgGGCGc---AGGUc -3'
miRNA:   3'- -GCCACCaGCGCCG-CUGCaauaUCCGu -5'
14600 5' -55.7 NC_003521.1 + 104155 0.67 0.937803
Target:  5'- uCGGUGcUCuGCGGCGGCGgcGcGGGUc -3'
miRNA:   3'- -GCCACcAG-CGCCGCUGCaaUaUCCGu -5'
14600 5' -55.7 NC_003521.1 + 198411 0.67 0.937803
Target:  5'- aCGGUGGcuuccgUUGUGGUGACGgu---GGCGg -3'
miRNA:   3'- -GCCACC------AGCGCCGCUGCaauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 180939 0.68 0.933046
Target:  5'- uGGUGG-CGCGGUGcCGUaGUccgcgGGGCu -3'
miRNA:   3'- gCCACCaGCGCCGCuGCAaUA-----UCCGu -5'
14600 5' -55.7 NC_003521.1 + 58993 0.68 0.933046
Target:  5'- uGGUGGU--CGGCGugGUag-AGGUAg -3'
miRNA:   3'- gCCACCAgcGCCGCugCAauaUCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.