miRNA display CGI


Results 21 - 40 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14601 3' -63.9 NC_003521.1 + 74711 0.66 0.672581
Target:  5'- cCGCCcugaAGCAGGcccgcgugaaccugcCGGCCcgcUCCCGCUAUg -3'
miRNA:   3'- cGCGG----UCGUCCa--------------GCCGG---AGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 191814 0.66 0.671639
Target:  5'- aCGUCuGCAuGGacUCGGCgUCCCGCagCACg -3'
miRNA:   3'- cGCGGuCGU-CC--AGCCGgAGGGCG--GUG- -5'
14601 3' -63.9 NC_003521.1 + 119802 0.66 0.671639
Target:  5'- gGCGCCAGCGGGgcgacaCGGUggUgCGCaCGCc -3'
miRNA:   3'- -CGCGGUCGUCCa-----GCCGgaGgGCG-GUG- -5'
14601 3' -63.9 NC_003521.1 + 132777 0.66 0.671639
Target:  5'- -aGCUGGUccGUCGcGUCaUCCCGCCGCc -3'
miRNA:   3'- cgCGGUCGucCAGC-CGG-AGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 176070 0.66 0.671639
Target:  5'- gGUGCCGcGCcGGcCGGCgUCuuGgCCACg -3'
miRNA:   3'- -CGCGGU-CGuCCaGCCGgAGggC-GGUG- -5'
14601 3' -63.9 NC_003521.1 + 18757 0.66 0.671639
Target:  5'- gGCGCCGaCGGGUcgcugcugcgaCGGCUggugcccCCCGCCGa -3'
miRNA:   3'- -CGCGGUcGUCCA-----------GCCGGa------GGGCGGUg -5'
14601 3' -63.9 NC_003521.1 + 203874 0.66 0.671639
Target:  5'- uCGCCgGGCAGcUCGGCUUCCuCGUCc- -3'
miRNA:   3'- cGCGG-UCGUCcAGCCGGAGG-GCGGug -5'
14601 3' -63.9 NC_003521.1 + 237993 0.66 0.671639
Target:  5'- uCGUCGGCGaucGGUCGGCUgggUCGCCAg -3'
miRNA:   3'- cGCGGUCGU---CCAGCCGGag-GGCGGUg -5'
14601 3' -63.9 NC_003521.1 + 5539 0.66 0.671639
Target:  5'- aCGgCAGCcGGcgCGGCCg-CCGCCAUc -3'
miRNA:   3'- cGCgGUCGuCCa-GCCGGagGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 75551 0.66 0.671639
Target:  5'- gGCGCCGGC-GG-CGGCUa--CGCCAg -3'
miRNA:   3'- -CGCGGUCGuCCaGCCGGaggGCGGUg -5'
14601 3' -63.9 NC_003521.1 + 106362 0.66 0.671639
Target:  5'- uGCGgUAGCGGGgaaCcGCCaUCuCCGCCGCc -3'
miRNA:   3'- -CGCgGUCGUCCa--GcCGG-AG-GGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 21400 0.66 0.665042
Target:  5'- aGCGCUgggauacggcccucuGGCAGcuacUCGGCCUcgucgugCCCGUCGCc -3'
miRNA:   3'- -CGCGG---------------UCGUCc---AGCCGGA-------GGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 216829 0.66 0.662211
Target:  5'- gGCGCgCAGgAGGUCGcag-CCCGCgGCg -3'
miRNA:   3'- -CGCG-GUCgUCCAGCcggaGGGCGgUG- -5'
14601 3' -63.9 NC_003521.1 + 123451 0.66 0.662211
Target:  5'- gGCGCCGuagcggggaccGCGGGUUGGCgaCUgGCCcCg -3'
miRNA:   3'- -CGCGGU-----------CGUCCAGCCGgaGGgCGGuG- -5'
14601 3' -63.9 NC_003521.1 + 153723 0.66 0.662211
Target:  5'- gGCGCCAcGCAGGccuucaaccUGGaCCUCaaccccuacgCCGCCGCc -3'
miRNA:   3'- -CGCGGU-CGUCCa--------GCC-GGAG----------GGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 109579 0.66 0.652762
Target:  5'- aGCGCC-GCucccGUCGGCaUCgCCGUCGCg -3'
miRNA:   3'- -CGCGGuCGuc--CAGCCGgAG-GGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 59512 0.66 0.652762
Target:  5'- gGCGCCcuggcccGCGGG-CGGCCugagcuucucuUCCCgGCUGCa -3'
miRNA:   3'- -CGCGGu------CGUCCaGCCGG-----------AGGG-CGGUG- -5'
14601 3' -63.9 NC_003521.1 + 239447 0.66 0.652762
Target:  5'- aGCGCgGGCucGGGgacagCGGUggCCCGCgGCg -3'
miRNA:   3'- -CGCGgUCG--UCCa----GCCGgaGGGCGgUG- -5'
14601 3' -63.9 NC_003521.1 + 150767 0.66 0.652762
Target:  5'- cCGCgAGCGcGUCGGCgUCCCGgaGCu -3'
miRNA:   3'- cGCGgUCGUcCAGCCGgAGGGCggUG- -5'
14601 3' -63.9 NC_003521.1 + 137842 0.66 0.652762
Target:  5'- aCGCC-GCGGcUgGGCCgcCCCGCCAg -3'
miRNA:   3'- cGCGGuCGUCcAgCCGGa-GGGCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.