miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14601 5' -57.1 NC_003521.1 + 43482 0.66 0.930601
Target:  5'- cGGcgGcCGugcuGGCCGcgGCGGCCAACa -3'
miRNA:   3'- uCCa-CaGCuu--CCGGCagUGCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 132294 0.66 0.925521
Target:  5'- cGGGUGaccaGGucGCCGUCGaaGCCAACg -3'
miRNA:   3'- -UCCACag--CUucCGGCAGUgcCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 58325 0.66 0.925521
Target:  5'- uGGGUGaUGAAGGaggugugaaUGUCAuCGGCCAGa -3'
miRNA:   3'- -UCCACaGCUUCCg--------GCAGU-GCCGGUUg -5'
14601 5' -57.1 NC_003521.1 + 7966 0.66 0.920219
Target:  5'- cGGUGUCGc-GGCCGggagggucCGCGG-CGGCg -3'
miRNA:   3'- uCCACAGCuuCCGGCa-------GUGCCgGUUG- -5'
14601 5' -57.1 NC_003521.1 + 109410 0.66 0.920219
Target:  5'- aGGGUG-CGc-GGCUGcaUCAUGGCCAGg -3'
miRNA:   3'- -UCCACaGCuuCCGGC--AGUGCCGGUUg -5'
14601 5' -57.1 NC_003521.1 + 190297 0.66 0.920219
Target:  5'- -cGUGUCuuGGGCgCGUCAUGuCCGGCg -3'
miRNA:   3'- ucCACAGcuUCCG-GCAGUGCcGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 208597 0.66 0.920219
Target:  5'- ---aGUgGGAccuGGCCGUCugGGCCGc- -3'
miRNA:   3'- uccaCAgCUU---CCGGCAGugCCGGUug -5'
14601 5' -57.1 NC_003521.1 + 10434 0.66 0.920219
Target:  5'- -cGUGUCGgcGGuuGUCcGCGGCacguGCg -3'
miRNA:   3'- ucCACAGCuuCCggCAG-UGCCGgu--UG- -5'
14601 5' -57.1 NC_003521.1 + 216253 0.67 0.914694
Target:  5'- gAGGUGgacgaGGAGGCCGcCGaguaguaGcGCCAGCu -3'
miRNA:   3'- -UCCACag---CUUCCGGCaGUg------C-CGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 17725 0.67 0.914694
Target:  5'- uGGGUGcCGggGGagaacCCGUCGgccgaGGCCGGg -3'
miRNA:   3'- -UCCACaGCuuCC-----GGCAGUg----CCGGUUg -5'
14601 5' -57.1 NC_003521.1 + 165127 0.67 0.914694
Target:  5'- uGGUGcggaCGggGGCUGgacCGCGguGCCGGCg -3'
miRNA:   3'- uCCACa---GCuuCCGGCa--GUGC--CGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 87250 0.67 0.914694
Target:  5'- cAGGUGgUGGAGcggcugugcGCCGUgCGCguGGCCAACg -3'
miRNA:   3'- -UCCACaGCUUC---------CGGCA-GUG--CCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 56906 0.67 0.914694
Target:  5'- uGGUGUUGcaccgguacAGcGCCGUgACGGCCGugGCu -3'
miRNA:   3'- uCCACAGCu--------UC-CGGCAgUGCCGGU--UG- -5'
14601 5' -57.1 NC_003521.1 + 17013 0.67 0.914694
Target:  5'- cGGUGgcggCGGcgcAGGcCCGUCgucugGCGGCCcACg -3'
miRNA:   3'- uCCACa---GCU---UCC-GGCAG-----UGCCGGuUG- -5'
14601 5' -57.1 NC_003521.1 + 149397 0.67 0.914694
Target:  5'- uGGGcuUCGuggccguGGCCGUCACGGaCgAGCa -3'
miRNA:   3'- -UCCacAGCuu-----CCGGCAGUGCC-GgUUG- -5'
14601 5' -57.1 NC_003521.1 + 212292 0.67 0.908949
Target:  5'- cAGGg--CGAAGGCCGgCAUGGgCAcGCa -3'
miRNA:   3'- -UCCacaGCUUCCGGCaGUGCCgGU-UG- -5'
14601 5' -57.1 NC_003521.1 + 136882 0.67 0.908949
Target:  5'- cGGGUGgCGccGGUguUCGCGGUCGACa -3'
miRNA:   3'- -UCCACaGCuuCCGgcAGUGCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 109358 0.67 0.908949
Target:  5'- cAGGagGcCGAcgAGGCCGagagCGCGGCCuuCa -3'
miRNA:   3'- -UCCa-CaGCU--UCCGGCa---GUGCCGGuuG- -5'
14601 5' -57.1 NC_003521.1 + 207331 0.67 0.907182
Target:  5'- cAGGUcuUCGGggggcgcgucccucGGGUCGgCGCGGCCGGCc -3'
miRNA:   3'- -UCCAc-AGCU--------------UCCGGCaGUGCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 109407 0.67 0.902984
Target:  5'- uGGUGUUGAAGG-CGUUgACGGCgauGCg -3'
miRNA:   3'- uCCACAGCUUCCgGCAG-UGCCGgu-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.