miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14602 3' -60.2 NC_003521.1 + 193246 0.66 0.819007
Target:  5'- --cGCCUGGGGuaccccggauACGGUCGGCUGCg-- -3'
miRNA:   3'- cauCGGGUCCU----------UGUCAGCCGGCGggu -5'
14602 3' -60.2 NC_003521.1 + 42959 0.66 0.819007
Target:  5'- -cAGCCCAGcGAGCGcgacccGcCGGC-GCCCAc -3'
miRNA:   3'- caUCGGGUC-CUUGU------CaGCCGgCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 232336 0.66 0.819007
Target:  5'- -gAGCCUccgAGGAGCAGUagcagcagucgCGGCgGCaCCGc -3'
miRNA:   3'- caUCGGG---UCCUUGUCA-----------GCCGgCG-GGU- -5'
14602 3' -60.2 NC_003521.1 + 136123 0.66 0.819007
Target:  5'- -cGGUCgAGG-GCAcGUCGacGCCGCCCAc -3'
miRNA:   3'- caUCGGgUCCuUGU-CAGC--CGGCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 120900 0.66 0.815718
Target:  5'- gGUGG-UCGGGGGCGGcugcuugcguuugCGGCUGCCCGc -3'
miRNA:   3'- -CAUCgGGUCCUUGUCa------------GCCGGCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 162305 0.66 0.814064
Target:  5'- -gAGUCCGcGGAAuccgcgucgcgugucCGGUCGGCCcGUCCGa -3'
miRNA:   3'- caUCGGGU-CCUU---------------GUCAGCCGG-CGGGU- -5'
14602 3' -60.2 NC_003521.1 + 29862 0.66 0.810739
Target:  5'- --cGCCCGGGAcGCAGaaGGCCGUg-- -3'
miRNA:   3'- cauCGGGUCCU-UGUCagCCGGCGggu -5'
14602 3' -60.2 NC_003521.1 + 39388 0.66 0.810739
Target:  5'- --cGCCCAGGGccagguacaGCuGGUCcuguuggcacaGGCCGUCCAg -3'
miRNA:   3'- cauCGGGUCCU---------UG-UCAG-----------CCGGCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 68827 0.66 0.810739
Target:  5'- -gGGCCCuGGcACAGUCGGUCaacgagaCCCu -3'
miRNA:   3'- caUCGGGuCCuUGUCAGCCGGc------GGGu -5'
14602 3' -60.2 NC_003521.1 + 239615 0.66 0.810739
Target:  5'- --cGCCCAGGGccagguacaGCuGGUCcuguuggcacaGGCCGUCCAg -3'
miRNA:   3'- cauCGGGUCCU---------UG-UCAG-----------CCGGCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 99519 0.66 0.810739
Target:  5'- gGgcGCCCAGGAucaGGUCGGagaCCGUgCCGc -3'
miRNA:   3'- -CauCGGGUCCUug-UCAGCC---GGCG-GGU- -5'
14602 3' -60.2 NC_003521.1 + 129883 0.66 0.808229
Target:  5'- -cGGCCgGGGAggaggaggacgacgACGGggCGGCCGCgCGc -3'
miRNA:   3'- caUCGGgUCCU--------------UGUCa-GCCGGCGgGU- -5'
14602 3' -60.2 NC_003521.1 + 28863 0.66 0.802323
Target:  5'- -cGGCgC-GGcACGGUCGaGUCGCCCAa -3'
miRNA:   3'- caUCGgGuCCuUGUCAGC-CGGCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 131298 0.66 0.802323
Target:  5'- -gGGCCUaccAGGAACAccGUCGGCgGCgUCAc -3'
miRNA:   3'- caUCGGG---UCCUUGU--CAGCCGgCG-GGU- -5'
14602 3' -60.2 NC_003521.1 + 149454 0.66 0.802323
Target:  5'- -gGGCCCGGGGu---UCGGCC-CCCu -3'
miRNA:   3'- caUCGGGUCCUugucAGCCGGcGGGu -5'
14602 3' -60.2 NC_003521.1 + 90147 0.66 0.802323
Target:  5'- -cAGCCCAGcAGCAG-CGgcGCCGCCg- -3'
miRNA:   3'- caUCGGGUCcUUGUCaGC--CGGCGGgu -5'
14602 3' -60.2 NC_003521.1 + 173537 0.66 0.802323
Target:  5'- -gGGCgUCAGGcGCAG-CGGCUGUCCu -3'
miRNA:   3'- caUCG-GGUCCuUGUCaGCCGGCGGGu -5'
14602 3' -60.2 NC_003521.1 + 75117 0.66 0.802323
Target:  5'- gGUGGCCCgcacGGuGGACGGcuuUCGGCgGCCg- -3'
miRNA:   3'- -CAUCGGG----UC-CUUGUC---AGCCGgCGGgu -5'
14602 3' -60.2 NC_003521.1 + 181294 0.66 0.793768
Target:  5'- -cAG-CCGGGAAgAGaagcUCaGGCCGCCCGc -3'
miRNA:   3'- caUCgGGUCCUUgUC----AG-CCGGCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 100624 0.66 0.793768
Target:  5'- uUGGCCgGGGGACcucgaaaacCGGCCGuCCCGc -3'
miRNA:   3'- cAUCGGgUCCUUGuca------GCCGGC-GGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.